Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2259
         (536 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    25   0.32 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   3.9  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   5.2  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    21   6.9  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
 Frame = +2

Query: 407 YGRNVYPKTTMRSESG-----PTSTILIWFKN 487
           +G+  YP   MR E       P S + +WFKN
Sbjct: 88  FGKTRYPDIFMREEVALKINLPESRVQVWFKN 119


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
 Frame = +2

Query: 407 YGRNVYPKTTMRSESG-----PTSTILIWFKN 487
           + +  YP   MR E       P S + +WFKN
Sbjct: 146 FAKTRYPDIFMREEVAVKINLPESRVQVWFKN 177


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 455 PTSTILIWFKN 487
           P STI +WF+N
Sbjct: 111 PESTIKVWFQN 121


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 291 YPSLNQI*KKGKECPVYNLWHGD 223
           Y ++ ++ +KG E  V+++ H D
Sbjct: 240 YSAVQEMHRKGHEIAVHSITHND 262



 Score = 20.6 bits (41), Expect = 9.1
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 252 CPVYNLWHGDPTHEGY 205
           CP    W  DPT +G+
Sbjct: 518 CPNNYPWVNDPTGDGF 533


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 255 ECPVYNLWHGDPTHEGY 205
           ECP    W  DPT +G+
Sbjct: 508 ECPNNYPWILDPTGDGF 524


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,085
Number of Sequences: 336
Number of extensions: 3031
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)