Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2259
         (536 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    28   1.0  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    25   5.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   5.4  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   7.2  

>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = -2

Query: 208 IRIVQFAYKKRVRSRVPNSTILSSNGVTYFLVQIIESSLRYLLI*SARKRTLKAYNK 38
           +R++Q   + R+  +VP+S ILS    T  +++ +     YL + S +K  LK+ NK
Sbjct: 361 VRLLQ--QRNRLVEQVPHSLILSVCSRTGDVIEPVMVPQWYLSVDSLKKEVLKSSNK 415


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 175 LVFYMQIVLFVSFVRRVTMPQIIY 246
           + F  +  +F+S VR++  P ++Y
Sbjct: 719 ITFMFEFAVFISMVRKIVRPGVLY 742


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
            orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 11/65 (16%)
 Frame = +2

Query: 305  TTTYPV*DMT-------RKSQFHYLISTLSFEPDSKIASLQYGRNVY---PKT-TMRSES 451
            +T YPV  +T         S F Y  S+  +EP + + +  Y  +VY   P T T+ S  
Sbjct: 1423 STVYPVTHVTTTTGVSGESSAFTYTTSSTQYEPSTVVTTSYYTTSVYTSAPATETVSSTE 1482

Query: 452  GPTST 466
             P S+
Sbjct: 1483 APESS 1487


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 198 TIRILRA*GHHATNYIQDILFPFFKSGLN 284
           T+ +L++   H  +YI   +FP  K+G+N
Sbjct: 77  TMELLKS-NPHVVSYIDSCIFPLEKAGVN 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,386
Number of Sequences: 5004
Number of extensions: 47607
Number of successful extensions: 93
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)