Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2259
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   4.6  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   4.6  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   6.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   6.0  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.0  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 205 RIVQFAYKKRVRSRVPNSTILSSNGVTY 122
           +  +F + K + S    STI+ SNGVT+
Sbjct: 283 KTAEFDWNKPINSGF-YSTIMYSNGVTF 309


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 205 RIVQFAYKKRVRSRVPNSTILSSNGVTY 122
           +  +F + K + S    STI+ SNGVT+
Sbjct: 283 KTAEFDWNKPINSGF-YSTIMYSNGVTF 309


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 214 RRIRIVQFAYKKRVRSRVPNSTILSSNGVT 125
           RRIR ++    +R +SR P+S   SS   T
Sbjct: 67  RRIREIEKLGSERSKSRSPDSRDRSSTSNT 96


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 296 CDIQV*TRFKKREKNVLYIIC 234
           CD+ V T F +  + V+Y  C
Sbjct: 132 CDVDVSTFFDQLGQEVIYTAC 152


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 193 FAYKKRVRSRVPNSTILSSNGVTYF 119
           F  +K   S+ P+S I ++ GV YF
Sbjct: 289 FEGEKGPNSQGPSSVIDTNTGVDYF 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,582
Number of Sequences: 438
Number of extensions: 3421
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)