Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2258
         (545 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    33   3.3  
UniRef50_A6LR91 Cluster: Alcohol dehydrogenase GroES domain prot...    33   4.3  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 33.5 bits (73), Expect = 3.3
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = +2

Query: 443 RFPSGGRFCEALLLVKLALSTSSDLKTRE 529
           RF S GRFCEALLL+ L L+ S  L   E
Sbjct: 86  RFRSDGRFCEALLLLGLVLANSLRLSPYE 114


>UniRef50_A6LR91 Cluster: Alcohol dehydrogenase GroES domain
           protein; n=1; Clostridium beijerinckii NCIMB 8052|Rep:
           Alcohol dehydrogenase GroES domain protein - Clostridium
           beijerinckii NCIMB 8052
          Length = 373

 Score = 33.1 bits (72), Expect = 4.3
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = -1

Query: 356 TIQMSKYTFGS*QISVVNCEPFKNDWIKHWSVIIYD*RPALASLRKH 216
           T  +SK  FG+ Q+ VV    F+ + ++ W+  +YD   +L SL+K+
Sbjct: 211 TAMLSKLVFGASQVHVVEPVEFRRNLLREWTKYVYD---SLDSLKKN 254


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 475,060,140
Number of Sequences: 1657284
Number of extensions: 7994295
Number of successful extensions: 15927
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15881
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35405708495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)