Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2258
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC61.05 |||S. pombe specific multicopy membrane protein family...    28   1.0  
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha...    25   7.3  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   7.3  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   9.6  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    25   9.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   9.6  

>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -1

Query: 515 NLTTLITLTLPRAVLRRIYHRMGNATH*EDPARNSVSLNCYAVLVLK*VFNCNTIQMSKY 336
           N+ T +   LP   + R+Y + G +      A+ S+   CY  L    V NC  + + + 
Sbjct: 345 NIYTFVYYGLPFFAVYRLYKQAGESRKLGFEAKYSLLRTCYIALAAVTVSNCLFLGVVRP 404

Query: 335 TFGS*QISV 309
             GS Q+S+
Sbjct: 405 LLGS-QLSL 412


>SPAC823.13c |||mitochondrial inner membrane
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 513 SDDVDNANFTKSSASQNLPP 454
           S  +DN N  K+SAS  LPP
Sbjct: 236 SPKIDNKNLPKNSASLILPP 255


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 112 HQLPISESLIKIGPAVPE 59
           H +P+ E ++ IGP  PE
Sbjct: 417 HGIPVQERIVNIGPNKPE 434


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 276 QTLVCNYLRLTTRPRFASETLNF 208
           ++L   +L LT +PRF  E +NF
Sbjct: 353 ESLCFLFLLLTNQPRFTDELVNF 375


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 522 VFKSDDVDNANFTKSSASQNLPPDGKR 442
           V +  D +N N   +S+S++  P+GKR
Sbjct: 175 VIQRIDFENVNEKNNSSSEDTQPNGKR 201


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +1

Query: 277 IQSFLNGSQLTTDICYEPNVYFDICIVLQLKTYFN 381
           +  F+      T  C+    Y DIC+  QL+  F+
Sbjct: 889 VSHFVFSCPYYTHFCHPTRRYIDICVQRQLREAFD 923


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,604
Number of Sequences: 5004
Number of extensions: 34703
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)