Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2258
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0610 + 4889158-4889386,4889584-4890297,4890814-4891166,489...    29   2.4  
04_03_0254 - 13546324-13546814,13547211-13547279,13547542-135476...    29   2.4  
12_02_0664 - 21659497-21659547,21659750-21659860,21659971-216600...    27   7.4  
03_02_0464 - 8683232-8684596                                           27   7.4  

>11_01_0610 +
           4889158-4889386,4889584-4890297,4890814-4891166,
           4891619-4891830,4892633-4892889,4892984-4893162,
           4893901-4893948
          Length = 663

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +3

Query: 210 NLMFPKRSEGGSLVVNNYRPMFDPIVFKWFTIDDRYLLRTERVFRHLY 353
           N + P     GS +V  + PM +     WF   DR+  R +  F + Y
Sbjct: 583 NKLLPSYVPEGSFIVREHTPMSNLFSCLWFNEVDRFTPRDQLSFAYTY 630


>04_03_0254 -
           13546324-13546814,13547211-13547279,13547542-13547657,
           13547835-13547910,13549752-13550274
          Length = 424

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 279 PIVFKWFTIDDRYLLRTERVFRH 347
           P  FK FT++ ++LLRT+ V +H
Sbjct: 231 PDAFKIFTVNYKFLLRTQSVLKH 253


>12_02_0664 -
           21659497-21659547,21659750-21659860,21659971-21660039,
           21660442-21660513,21660669-21660749,21661256-21661348,
           21661581-21661733,21661846-21661897,21662033-21662218,
           21662830-21662949,21663059-21663297
          Length = 408

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
 Frame = -3

Query: 288 KRLDQTLVCNYLRLTTRPR---------FASETLNFIIDRRSAGRQ*LRLTPRGEAS 145
           +RLD  LV    RLT RP          FA   LN I+D    G +    T RG +S
Sbjct: 49  QRLDDALVARVARLTARPPHRFLRRGLFFAHRDLNEILDLYEKGEKFYLYTGRGPSS 105


>03_02_0464 - 8683232-8684596
          Length = 454

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 103 PISESLIKIGPAVPEISRNKQTDRQTDRQ 17
           P+S   + I PAVP    N+Q  + T RQ
Sbjct: 168 PLSPQSLSITPAVPSSPHNRQIPQATTRQ 196


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,505,998
Number of Sequences: 37544
Number of extensions: 211579
Number of successful extensions: 378
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)