Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2258
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          23   2.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   2.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   2.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   2.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.5  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   8.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.2  

>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 274 LIQSFLNGSQLTTDICYEPNVYFDICIVLQLK 369
           +  + L G Q T DI +  N +  +CIV++ K
Sbjct: 33  ITHNILRGMQFT-DITFGVNKWSKVCIVVRRK 63


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 62  WNGWTDFDETFTN 100
           WN W D+ ET  N
Sbjct: 696 WNKWNDWQETQNN 708


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 62  WNGWTDFDETFTN 100
           WN W D+ ET  N
Sbjct: 696 WNKWNDWQETQNN 708


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 62  WNGWTDFDETFTN 100
           WN W D+ ET  N
Sbjct: 696 WNKWNDWQETQNN 708


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 493 SVINVVRFENP*TH 534
           SV  ++RFENP TH
Sbjct: 68  SVYPLLRFENPETH 81


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 255 LRLTTRPRFASETLNFIIDRRS 190
           +RLT + +   E  NF +DR+S
Sbjct: 154 MRLTIKAKCPMELRNFPMDRQS 175


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 334 RSVRSKYRSSIVNHLKTIGSN 272
           RSV S +RSS+ N+   I S+
Sbjct: 38  RSVSSGFRSSLRNYKTLISSH 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,432
Number of Sequences: 438
Number of extensions: 2791
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)