Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2257
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1477 + 30408296-30409123,30409227-30410264                       30   1.2  
02_04_0408 + 22655454-22655520,22656055-22656356                       28   4.8  

>06_03_1477 + 30408296-30409123,30409227-30410264
          Length = 621

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 506 FLGPTVSQSRTNPTYPARPLGAEDQVGGSALGAKKRPLGYQRL--GIEKKSGVYSYCDDN 333
           FL P   +  T+PTY  R +      G       ++PLG+  L      K+ +  +CD N
Sbjct: 264 FLCPISLEIMTDPTYERRSIQKWLDAGQRTCPKTQQPLGHLSLAPNYALKNLIMQWCDKN 323

Query: 332 DVQI 321
            V+I
Sbjct: 324 KVEI 327


>02_04_0408 + 22655454-22655520,22656055-22656356
          Length = 122

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -3

Query: 494 TVSQSRTNPTYPARPLGAEDQVGG-SALGAKKRPLGY 387
           T   + + PTYP    G++ Q GG SA G   +  GY
Sbjct: 21  TSEAANSQPTYPPANGGSDGQAGGSSAAGGNGKSAGY 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,753,430
Number of Sequences: 37544
Number of extensions: 288728
Number of successful extensions: 809
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)