Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2257
(589 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ318054-1|CAC39299.1| 826|Homo sapiens SRPK1a protein kinase p... 31 2.3
Z30094-1|CAA82910.1| 395|Homo sapiens basic transcripion factor... 30 7.0
U80017-1|AAC52046.1| 143|Homo sapiens basic transcription facto... 30 7.0
BC105980-1|AAI05981.1| 395|Homo sapiens DKFZP686P18101 protein ... 30 7.0
BC065021-1|AAH65021.1| 395|Homo sapiens general transcription f... 30 7.0
BC064557-1|AAH64557.1| 395|Homo sapiens LOC730394 protein protein. 30 7.0
AF117067-1|AAF43261.1| 974|Homo sapiens rho-type GTPase-activat... 30 7.0
AF022212-1|AAC98540.2| 690|Homo sapiens Rho GTPase activating p... 30 7.0
AF012272-1|AAC98539.2| 765|Homo sapiens Rho GTPase activating p... 30 7.0
AB208792-1|BAD92029.1| 729|Homo sapiens Rho GTPase activating p... 30 7.0
>AJ318054-1|CAC39299.1| 826|Homo sapiens SRPK1a protein kinase
protein.
Length = 826
Score = 31.5 bits (68), Expect = 2.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -3
Query: 479 RTNPTYPARPLGAEDQVGGSALGAKKRP 396
R+ P +PARP A + G ALG ++RP
Sbjct: 72 RSRPLFPARPARALGPLQGPALGGRRRP 99
>Z30094-1|CAA82910.1| 395|Homo sapiens basic transcripion factor 2,
44 kD subunit protein.
Length = 395
Score = 29.9 bits (64), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 396 GPFFCPECRTSYLVFRA*GACRVCGI 473
G +FCP+CR Y C++CG+
Sbjct: 287 GGYFCPQCRAKYCELPV--ECKICGL 310
>U80017-1|AAC52046.1| 143|Homo sapiens basic transcription factor 2
p44 protein.
Length = 143
Score = 29.9 bits (64), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 396 GPFFCPECRTSYLVFRA*GACRVCGI 473
G +FCP+CR Y C++CG+
Sbjct: 35 GGYFCPQCRAKYCELPV--ECKICGL 58
>BC105980-1|AAI05981.1| 395|Homo sapiens DKFZP686P18101 protein
protein.
Length = 395
Score = 29.9 bits (64), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 396 GPFFCPECRTSYLVFRA*GACRVCGI 473
G +FCP+CR Y C++CG+
Sbjct: 287 GGYFCPQCRAKYCELPV--ECKICGL 310
>BC065021-1|AAH65021.1| 395|Homo sapiens general transcription
factor IIH, polypeptide 2, 44kDa-like protein.
Length = 395
Score = 29.9 bits (64), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 396 GPFFCPECRTSYLVFRA*GACRVCGI 473
G +FCP+CR Y C++CG+
Sbjct: 287 GGYFCPQCRAKYCELPV--ECKICGL 310
>BC064557-1|AAH64557.1| 395|Homo sapiens LOC730394 protein protein.
Length = 395
Score = 29.9 bits (64), Expect = 7.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 396 GPFFCPECRTSYLVFRA*GACRVCGI 473
G +FCP+CR Y C++CG+
Sbjct: 287 GGYFCPQCRAKYCELPV--ECKICGL 310
>AF117067-1|AAF43261.1| 974|Homo sapiens rho-type GTPase-activating
protein isoform 3 protein.
Length = 974
Score = 29.9 bits (64), Expect = 7.0
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -1
Query: 577 GSDP-GTED--RTSSAGESFSPVGT*NSLGPR--SRSRGPIPHTLHAP 449
GSD G E R ++AG +SP SLGPR S SRGP P P
Sbjct: 47 GSDEAGAEGSARGATAGRLYSPSLPAESLGPRLASSSRGPPPRATRLP 94
>AF022212-1|AAC98540.2| 690|Homo sapiens Rho GTPase activating
protein 6 isoform 2 protein.
Length = 690
Score = 29.9 bits (64), Expect = 7.0
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -1
Query: 577 GSDP-GTED--RTSSAGESFSPVGT*NSLGPR--SRSRGPIPHTLHAP 449
GSD G E R ++AG +SP SLGPR S SRGP P P
Sbjct: 47 GSDEAGAEGSARGATAGRLYSPSLPAESLGPRLASSSRGPPPRATRLP 94
>AF012272-1|AAC98539.2| 765|Homo sapiens Rho GTPase activating
protein 6 isoform 3 protein.
Length = 765
Score = 29.9 bits (64), Expect = 7.0
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -1
Query: 577 GSDP-GTED--RTSSAGESFSPVGT*NSLGPR--SRSRGPIPHTLHAP 449
GSD G E R ++AG +SP SLGPR S SRGP P P
Sbjct: 47 GSDEAGAEGSARGATAGRLYSPSLPAESLGPRLASSSRGPPPRATRLP 94
>AB208792-1|BAD92029.1| 729|Homo sapiens Rho GTPase activating
protein 6 isoform 1 variant protein.
Length = 729
Score = 29.9 bits (64), Expect = 7.0
Identities = 22/48 (45%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = -1
Query: 577 GSDP-GTED--RTSSAGESFSPVGT*NSLGPR--SRSRGPIPHTLHAP 449
GSD G E R ++AG +SP SLGPR S SRGP P P
Sbjct: 118 GSDEAGAEGSARGATAGRLYSPSLPAESLGPRLASSSRGPPPRATRLP 165
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,255,445
Number of Sequences: 237096
Number of extensions: 1671178
Number of successful extensions: 4482
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4480
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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