Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2257
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80815-4|AAO91674.1| 524|Caenorhabditis elegans Hypothetical pr... 28 4.3
U80815-3|AAK73899.1| 499|Caenorhabditis elegans Hypothetical pr... 28 4.3
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z83111-4|CAB05535.2| 498|Caenorhabditis elegans Hypothetical pr... 27 9.9
S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein. 27 9.9
S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein. 27 9.9
AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical... 27 9.9
AF098997-2|AAC68722.2| 796|Caenorhabditis elegans Hypothetical ... 27 9.9
AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated... 27 9.9
AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated... 27 9.9
>U80815-4|AAO91674.1| 524|Caenorhabditis elegans Hypothetical
protein W02C12.3c protein.
Length = 524
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 236 LVNSLVNEPPGAMSQQ*RQKDEKRRYDQRSERDSVDLKNFKMRKELKQK 90
L N +PPGA QQ Q+ +++ YD + + F K ++Q+
Sbjct: 16 LNNPRAQQPPGAQQQQQPQQAQQQFYDDEPYQANASQFRFGAGKSMEQR 64
>U80815-3|AAK73899.1| 499|Caenorhabditis elegans Hypothetical
protein W02C12.3b protein.
Length = 499
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -3
Query: 236 LVNSLVNEPPGAMSQQ*RQKDEKRRYDQRSERDSVDLKNFKMRKELKQK 90
L N +PPGA QQ Q+ +++ YD + + F K ++Q+
Sbjct: 16 LNNPRAQQPPGAQQQQQPQQAQQQFYDDEPYQANASQFRFGAGKSMEQR 64
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -3
Query: 509 KFLGPTVSQSRTNPTYPARPLGAEDQVGGSALGAKKRPLGYQRLG 375
K++G V Q P P G VGG L A + Y R+G
Sbjct: 1530 KYVGAGVEQEPVAPPPPMAQAGPAPPVGGGGLRAARGASRYARVG 1574
>Z83111-4|CAB05535.2| 498|Caenorhabditis elegans Hypothetical
protein F57G8.5 protein.
Length = 498
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 102 FFTHFEIFQINRVTFAPLVVSTLFILLTSLLAH 200
FF H EI N +T L+ ++L+I + SLL H
Sbjct: 7 FFNHPEI---NLITTTVLIFASLYIAIISLLGH 36
>S47168-2|AAB23866.2| 919|Caenorhabditis elegans UNC-5 protein.
Length = 919
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 407 KKRPLGYQRLGIEKKSGVYSYCDDNDV-QILLTHNQLEATPT*LSRCY*FFE 255
K +PL Q++ EK G+Y Y + V ++LL H +S C +FE
Sbjct: 369 KSKPLKPQKMNSEKAGGIY-YSEPPGVRRLLLEHQHGTLLGEKISSCSQYFE 419
>S47168-1|AAB23867.2| 947|Caenorhabditis elegans UNC-5 protein.
Length = 947
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 407 KKRPLGYQRLGIEKKSGVYSYCDDNDV-QILLTHNQLEATPT*LSRCY*FFE 255
K +PL Q++ EK G+Y Y + V ++LL H +S C +FE
Sbjct: 397 KSKPLKPQKMNSEKAGGIY-YSEPPGVRRLLLEHQHGTLLGEKISSCSQYFE 447
>AL117195-12|CAB60765.1| 425|Caenorhabditis elegans Hypothetical
protein Y57A10A.19 protein.
Length = 425
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 197 SQQ*RQKDEKRRYDQRSERDSVDLKNFKMRKE-LKQKTR 84
S + +DEK R D++ + LK + R+E L+QK R
Sbjct: 199 SSESSSEDEKHRKDRKKKEKKQKLKEMEKRREKLRQKER 237
>AF098997-2|AAC68722.2| 796|Caenorhabditis elegans Hypothetical
protein T10D4.6 protein.
Length = 796
Score = 27.1 bits (57), Expect = 9.9
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = -3
Query: 182 QKDEKRRYDQRSERDSVDLKNFKMRKEL 99
Q+D+KR+Y+++ + +D F+++K L
Sbjct: 323 QRDQKRQYEEKFAEEELDKIPFEVKKNL 350
>AF036698-5|AAB88356.2| 567|Caenorhabditis elegans Uncoordinated
protein 5, isoform b protein.
Length = 567
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 407 KKRPLGYQRLGIEKKSGVYSYCDDNDV-QILLTHNQLEATPT*LSRCY*FFE 255
K +PL Q++ EK G+Y Y + V ++LL H +S C +FE
Sbjct: 369 KSKPLKPQKMNSEKAGGIY-YSEPPGVRRLLLEHQHGTLLGEKISSCSQYFE 419
>AF036698-4|AAB88355.1| 919|Caenorhabditis elegans Uncoordinated
protein 5, isoform a protein.
Length = 919
Score = 27.1 bits (57), Expect = 9.9
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 407 KKRPLGYQRLGIEKKSGVYSYCDDNDV-QILLTHNQLEATPT*LSRCY*FFE 255
K +PL Q++ EK G+Y Y + V ++LL H +S C +FE
Sbjct: 369 KSKPLKPQKMNSEKAGGIY-YSEPPGVRRLLLEHQHGTLLGEKISSCSQYFE 419
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,642,856
Number of Sequences: 27780
Number of extensions: 248528
Number of successful extensions: 737
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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