Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2256
         (455 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   1.8  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   3.1  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   4.1  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   7.2  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 356 IGLIDIKTGQLKEPKTGKLVDIKKAAKIGL 267
           I ++DI     +   TG    I +AAK+GL
Sbjct: 402 IAIVDITLDDFRGLCTGNKYPILRAAKLGL 431


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 122 DKVTEPKKVIXRNIEVEPKVKDAKVS 45
           DK+ +P+KV+      EP   D K+S
Sbjct: 90  DKLEKPRKVLPNFKTDEPICPDGKLS 115


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 17/68 (25%), Positives = 26/68 (38%)
 Frame = -3

Query: 447 RCSC*ENYRS*ICNIQCRGC*TSYFTRTCKNRAY*HQNRTIKRT*NR*IGRYKESCKNWA 268
           +C C E +   +CNI    C        C+N      +R      N   G   ++C    
Sbjct: 91  QCICKEGWEGALCNINTDDC----SPNPCRNNGS-CVDRIADFECNCKNGWKGKTCSLKD 145

Query: 267 SRCDRSSC 244
           S CD ++C
Sbjct: 146 SHCDHTTC 153


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +3

Query: 3   RILGYARPRRNILNTYFSIFHFWFYFNITXNY 98
           R L   R RRN       I + +FY +++  Y
Sbjct: 226 RFLDARRKRRNFSKQASEILNEYFYSHLSNPY 257


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,978
Number of Sequences: 336
Number of extensions: 1837
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10406187
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)