Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2256
(455 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 0.78
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 28 0.78
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 1.8
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 26 2.4
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 26 2.4
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 3.1
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|... 26 3.1
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 25 4.2
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.3
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 25 7.3
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 7.3
SPBC119.16c |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.6
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 0.78
Identities = 13/24 (54%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Frame = +3
Query: 48 YFSIFHFW-FYF-NITXNYFFRLC 113
YFS+F F+ F F ++ N+FFRLC
Sbjct: 113 YFSLFSFFSFLFTSLHFNFFFRLC 136
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 27.9 bits (59), Expect = 0.78
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 78 FNITXNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQ 194
F + Y L L+N N+TW ++VLLWL Q
Sbjct: 107 FPVGVQYIKELYTLLNE----SSNNTWHFHYIVLLWLSQ 141
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 26.6 bits (56), Expect = 1.8
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 449 KDALAKKIIDPESVIYNVEAAKPVTLQEPVKIGLIDIKTGQ-LKEP 315
K ALA I +S +Y+V A+ +T K+ D+ G LK+P
Sbjct: 264 KVALASCYISDDSSLYSVSLARDITEAIQNKLNFSDVNFGDLLKKP 309
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 26.2 bits (55), Expect = 2.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 164 QTPCLALVASIYFSPLELPVLLPYQRVQELRSQRL 268
QTPCL V + +P + + R+Q L QRL
Sbjct: 241 QTPCLHSVPDAFTNPDVATLYQKFLRLQSLEHQRL 275
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 2.4
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -2
Query: 160 NQVELCPLIKRLLTRLQS 107
N+V+LCPL++ +TR+ S
Sbjct: 319 NRVQLCPLVRSTVTRILS 336
>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 470
Score = 25.8 bits (54), Expect = 3.1
Identities = 22/98 (22%), Positives = 40/98 (40%)
Frame = +3
Query: 42 NTYFSIFHFWFYFNITXNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFTFHRLSSL 221
+++ S FW YF + + + V + S S +LK + ++ L F L +
Sbjct: 99 SSFSSTSKFWRYFAYLLSLQI-VIDFVLYKLSSAMASLHYLKFVKIIALSYICFSSLIRI 157
Query: 222 YYCHTSEYRSCDHSD*PNFCSFLYIYQFTCFRFF*LSC 335
+C T R S F + L+ ++ T R + C
Sbjct: 158 CHCWTYFIRIMGLSSLNKFVNLLHDFETTSNRVYSQIC 195
>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 25.8 bits (54), Expect = 3.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -2
Query: 160 NQVELCPLIKRLLTRL 113
NQVELC +I R+LT +
Sbjct: 395 NQVELCKIIHRMLTEV 410
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.4 bits (53), Expect = 4.2
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 280 AAFFISTNLPVLGSFNCPVLMSISPIFTGSCKVTGLAASTLYITDSGS 423
++ F+S + S P +SP T + + LAASTL I SGS
Sbjct: 154 SSIFLSNWSTIFSSNASPTDSQLSPTHTST--IAELAASTLSIFPSGS 199
>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 500
Score = 24.6 bits (51), Expect = 7.3
Identities = 12/53 (22%), Positives = 22/53 (41%)
Frame = +3
Query: 69 WFYFNITXNYFFRLCNLVNSRFISGHNSTWFLKHLVLLWLHQFTFHRLSSLYY 227
WF++ +T +FF+ S +S L W H+F L+ + +
Sbjct: 270 WFFYMLTIIFFFKEVTADKSEKVSQQKENDDEDRPKLSWKHKFLLFFLAEVAF 322
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 24.6 bits (51), Expect = 7.3
Identities = 10/41 (24%), Positives = 20/41 (48%)
Frame = +2
Query: 119 CQQSLYQRTQFYLVPQTPCLALVASIYFSPLELPVLLPYQR 241
C +S + R + + C + + +PL+ PVL+ + R
Sbjct: 987 CTKSSHYRKKLWDFYNFSCTITILMLLLAPLDFPVLIVWAR 1027
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 24.6 bits (51), Expect = 7.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 140 RTQFYLVPQTPCLALVASIYFSPLELPVLLPYQRVQELR 256
R QF+L+ L LV +F P L Y+R + LR
Sbjct: 240 RWQFWLLMMISALVLVIITFFMPETSEWHLLYKRAKRLR 278
>SPBC119.16c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +3
Query: 111 CNLVNSRFISGHNSTWFLKHLVLLWLHQFTFHRLSSLYYCHT 236
C+ ++ F+S + W KH+ + F R+S ++ T
Sbjct: 397 CHSLDKSFVSEISQIWLKKHINWQYGKYFWLRRVSLIFLAST 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,360
Number of Sequences: 5004
Number of extensions: 28787
Number of successful extensions: 115
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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