Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2256
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0228 + 15903452-15903812,15904153-15904202,15904615-159047... 28 4.1
03_04_0229 - 19018521-19018927,19019132-19019795 28 4.1
03_02_0404 - 8165211-8165318,8165397-8165733,8166031-8166242,816... 28 4.1
02_05_1044 + 33728623-33728768,33728814-33728993,33729446-337295... 28 4.1
01_06_0246 + 27845898-27846001,27846235-27846237,27846472-278467... 28 4.1
01_07_0141 - 41390483-41391448 27 7.2
08_02_0239 - 14680013-14680291,14680560-14680649,14680654-146810... 27 9.5
08_01_0830 + 8055118-8056698 27 9.5
03_06_0177 + 32163393-32163443,32163711-32163803,32163875-321640... 27 9.5
>12_02_0228 +
15903452-15903812,15904153-15904202,15904615-15904713,
15907146-15907415,15908045-15908125,15909033-15909599,
15909677-15910053,15910326-15911613
Length = 1030
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 259 TATSPIFAAFFISTNLPVLGS-FNCPVLMSISPIFT 363
+A+SPIF STN P GS P + SP+F+
Sbjct: 874 SASSPIFCNRLTSTNAPPFGSPATSPFSSTSSPVFS 909
>03_04_0229 - 19018521-19018927,19019132-19019795
Length = 356
Score = 27.9 bits (59), Expect = 4.1
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -1
Query: 134 KATVDKVTEPKKVIXRNIEVEPKVKDAKVSVXDIPSRPSISE 9
+A+V ++ EP +E EP+V + VS ++P +PS+ E
Sbjct: 10 EASVSRIEEPPV-----LESEPEVSTSLVSTRELPPKPSLVE 46
>03_02_0404 -
8165211-8165318,8165397-8165733,8166031-8166242,
8166419-8166526,8166676-8166783,8166884-8166993,
8167122-8167228,8167349-8167566,8167674-8167841,
8168033-8168151,8168438-8168525,8168655-8168849,
8168968-8169271,8169363-8169480,8170034-8170133,
8170283-8170468
Length = 861
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -1
Query: 332 GQLKEPKTGKLVDIKKAAKIGLVAVIAA 249
G +++PK G L D+ KA K+ A+IAA
Sbjct: 331 GMVRQPKWGHLRDVHKAIKLCEPALIAA 358
>02_05_1044 +
33728623-33728768,33728814-33728993,33729446-33729523,
33729834-33729930,33730206-33730339,33730944-33731025,
33731631-33731717,33731875-33731981,33732674-33732845,
33733018-33733259,33733482-33733563,33733954-33734019,
33734040-33734159,33734935-33735012,33735083-33735178,
33735791-33735897,33736031-33736199,33736402-33736452,
33736567-33736650,33736946-33737040,33737175-33737265,
33737342-33737488,33737614-33737676
Length = 857
Score = 27.9 bits (59), Expect = 4.1
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 99 FFRLCNLVNSRFISG-HNSTWFLKHLVLLWLHQFTFHR--LSSLYYCHTSEYRSC 254
F + C + N + + +N + + L + L FT +S++ Y H EY+SC
Sbjct: 131 FLQECVINNGTYTNNEYNDVYLVTTLTPIPLEAFTLQESEVSAVRYMHLDEYKSC 185
>01_06_0246 +
27845898-27846001,27846235-27846237,27846472-27846700,
27846814-27846968,27847091-27847136,27847233-27847324,
27847425-27847521,27847649-27847705,27847799-27847927
Length = 303
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 309 CFRFF*LSCFDVNKPYFYRFL*SNWFSSLYIVYYR 413
C + L + PYF FL N+F S YI++ R
Sbjct: 95 CLLYLSLIGYKAAVPYFTVFLLINYFMSFYIIFRR 129
>01_07_0141 - 41390483-41391448
Length = 321
Score = 27.1 bits (57), Expect = 7.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 289 FISTNLPVLGSFNCPVLMSISPIFTGSCKVTGLAASTLYITDSGSII 429
F+S +P L + P+L ++ P F S G+ S T SG+++
Sbjct: 160 FMSYVIPFLERTHAPLLANLYPYFIYSYNPGGMDISFALFTASGAVV 206
>08_02_0239 -
14680013-14680291,14680560-14680649,14680654-14681047,
14682052-14682137,14683327-14683465,14683470-14683585
Length = 367
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 87 TXNYFFRLCNLVNSRFISGHNSTW 158
T + RLC+L+ SRF H S W
Sbjct: 255 TRECYQRLCDLIPSRFQGCHESFW 278
>08_01_0830 + 8055118-8056698
Length = 526
Score = 26.6 bits (56), Expect = 9.5
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 55 ASFT-FGSTSILRXITFLGSVTLSTVALSAD 144
A FT F SILR + F+ +VTLS + ++ D
Sbjct: 194 AQFTGFAEESILRMLAFVDAVTLSALNVNDD 224
>03_06_0177 +
32163393-32163443,32163711-32163803,32163875-32164071,
32164157-32164262,32164391-32164537,32164637-32164756
Length = 237
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +3
Query: 159 FLKHLVLLWLHQFTFHRLSSLYYCHTSEY--RSCDH 260
F+ L+ LH+F FH + Y+ +T+ Y C H
Sbjct: 92 FIWTLIEYTLHRFLFHIETKTYWANTAHYLLHGCHH 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,237,295
Number of Sequences: 37544
Number of extensions: 161610
Number of successful extensions: 483
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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