Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2256
(455 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089) 29 1.4
SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.2
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 28 3.2
SB_40621| Best HMM Match : DUF689 (HMM E-Value=7.8) 27 5.6
SB_19864| Best HMM Match : Baculo_p24 (HMM E-Value=1.7) 27 5.6
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17) 27 5.6
SB_47731| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_32316| Best HMM Match : Baculo_p24 (HMM E-Value=1.2) 27 5.6
SB_30075| Best HMM Match : zf-CHC2 (HMM E-Value=5.4) 27 5.6
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054) 27 5.6
SB_16430| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.6
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8) 27 9.7
>SB_6220| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0089)
Length = 374
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -1
Query: 395 EAAKPVT-LQEPVKIGLIDIKTGQLKEPKTGKLVDIKKAAKIGLVAVIAAP 246
+A K ++ L+E V G D KTG ++ KLV + AA++G AV P
Sbjct: 263 KAEKTISMLREAVNRGEKD-KTGLQSRLRSNKLVSVSSAARVGSTAVTRPP 312
>SB_19201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -1
Query: 140 ADKATVDKVTEPKKVIXRNI-EVEPKVKDAKVSVXDIP-SRPS 18
+DK+ D + EP K+ +NI + P+ + S+ D+P +RP+
Sbjct: 539 SDKSLADLLQEPSKLSGQNISQAGPQEAPSAASICDVPTTRPA 581
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 28.3 bits (60), Expect = 3.2
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 58 SFTFGSTSILRXITFLGSVTLSTVALSADTILLGSSNTLS 177
S T+ +T+I IT +GSV L TVAL D+ + NT S
Sbjct: 2992 SQTYYTTAIPENIT-VGSVILRTVALDLDSAVYSILNTTS 3030
>SB_40621| Best HMM Match : DUF689 (HMM E-Value=7.8)
Length = 176
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 428 IIDPESVIYNVEAAKPVTLQEPV--KIGLIDIKTGQLKEPKTGKLVDIKKAAK 276
II+ ES++ E PV L EP K+ L D + + + + +D K+ K
Sbjct: 110 IIEQESIVTEQETTDPVELSEPCSSKVALKDSSDQKGHDDRYQEFLDFKEMMK 162
>SB_19864| Best HMM Match : Baculo_p24 (HMM E-Value=1.7)
Length = 222
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 428 IIDPESVIYNVEAAKPVTLQEPV--KIGLIDIKTGQLKEPKTGKLVDIKKAAK 276
II+ ES++ E PV L EP K+ L D + + + + +D K+ K
Sbjct: 110 IIEQESIVTEQETTDPVELSEPCSSKVALKDSSDQKGHDDRYQEFLDFKEMMK 162
>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
Length = 1178
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 428 IIDPESVIYNVEAAKPVTLQEPV--KIGLIDIKTGQLKEPKTGKLVDIKKAAK 276
II+ ES++ E PV L EP K+ L D + + + + +D K+ K
Sbjct: 671 IIEQESIVTEQETTDPVELSEPCSSKVALKDSSDQKGHDDRYQEFLDFKEMMK 723
>SB_47731| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 428 IIDPESVIYNVEAAKPVTLQEPV--KIGLIDIKTGQLKEPKTGKLVDIKKAAK 276
II+ ES++ E PV L EP K+ L D + + + + +D K+ K
Sbjct: 18 IIEQESIVTEQETTDPVELSEPCSSKVALKDSSDQKGHDDRYQEFLDFKEMMK 70
>SB_40728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1317
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 428 IIDPESVIYNVEAAKPVTLQEPV--KIGLIDIKTGQLKEPKTGKLVDIKKAAK 276
II+ ES++ E PV L EP K+ L D + + + + +D K+ K
Sbjct: 110 IIEQESIVTEQETTDPVELSEPCSSKVALKDSSDQKGHDDRYQEFLDFKEMMK 162
>SB_32316| Best HMM Match : Baculo_p24 (HMM E-Value=1.2)
Length = 341
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 428 IIDPESVIYNVEAAKPVTLQEPV--KIGLIDIKTGQLKEPKTGKLVDIKKAAK 276
II+ ES++ E PV L EP K+ L D + + + + +D K+ K
Sbjct: 110 IIEQESIVTEQETTDPVELSEPCSSKVALKDSSDQKGHDDRYQEFLDFKEMMK 162
>SB_30075| Best HMM Match : zf-CHC2 (HMM E-Value=5.4)
Length = 335
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 428 IIDPESVIYNVEAAKPVTLQEPV--KIGLIDIKTGQLKEPKTGKLVDIKKAAK 276
II+ ES++ E PV L EP K+ L D + + + + +D K+ K
Sbjct: 110 IIEQESIVTEQETTDPVELSEPCSSKVALKDSSDQKGHDDRYQEFLDFKEMMK 162
>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
Length = 1012
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 428 IIDPESVIYNVEAAKPVTLQEPV--KIGLIDIKTGQLKEPKTGKLVDIKKAAK 276
II+ ES++ E PV L EP K+ L D + + + + +D K+ K
Sbjct: 86 IIEQESIVTEQETTDPVELSEPCSSKVALKDSSDQKGHDDRYQEFLDFKEMMK 138
>SB_16430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 341
Score = 27.5 bits (58), Expect = 5.6
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -1
Query: 428 IIDPESVIYNVEAAKPVTLQEPV--KIGLIDIKTGQLKEPKTGKLVDIKKAAK 276
II+ ES++ E PV L EP K+ L D + + + + +D K+ K
Sbjct: 110 IIEQESIVTEQETTDPVELSEPCSSKVALKDSSDQKGHDDRYQEFLDFKEMMK 162
>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 604
Score = 26.6 bits (56), Expect = 9.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 250 AAITATSPIFAAFFISTNLPVLGSF 324
+A T+ S IFAA+F+S L ++G F
Sbjct: 133 SAPTSLSVIFAAWFLSIFLTIIGEF 157
>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
Length = 361
Score = 26.6 bits (56), Expect = 9.7
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 449 KDALAKKII--DPESVIYNVEAAKPVTLQEPVKIGLIDIKTG 330
K A KK + DPE V +EAAKP L P + GL + K G
Sbjct: 123 KKAAQKKAVRPDPEPVKQEMEAAKPDPL--PKQTGLDEDKPG 162
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,253,478
Number of Sequences: 59808
Number of extensions: 209454
Number of successful extensions: 681
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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