Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2255
(470 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 160 1e-40
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 159 3e-40
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 92 4e-20
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 70 2e-13
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.12
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 3.3
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 3.3
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 25 5.8
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 5.8
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 25 5.8
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 160 bits (388), Expect = 1e-40
Identities = 71/114 (62%), Positives = 89/114 (78%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
K+VPR++ VDLEP V+D+ RTG YR LFHPEQLITGKEDA+NNYARGHYT+GKE+V V
Sbjct: 60 KYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHYTVGKELVDEVT 119
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
D+IR++AD C+GLQGFL+FH LL+ERL+++Y KKSKL+F P
Sbjct: 120 DKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALLLERLAMEYTKKSKLQFSVYP 173
Score = 84.6 bits (200), Expect = 7e-18
Identities = 35/46 (76%), Positives = 42/46 (91%)
Frame = +3
Query: 333 AIYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
++YPAPQVST+VVEPYNS+LTTH TL+ +DC FMVDNE+ YDICRR
Sbjct: 170 SVYPAPQVSTSVVEPYNSVLTTHATLDLADCTFMVDNESCYDICRR 215
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 159 bits (385), Expect = 3e-40
Identities = 68/114 (59%), Positives = 89/114 (78%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
K VPR++ VDLEP V+D+ RTG Y+ LFHPEQ++TGKEDA+NNYARGHYT+GKE++ VL
Sbjct: 64 KFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHYTVGKEMIDSVL 123
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
+RIR++AD C+GLQGFL+FH LL+ERL+++YGKKS L+F P
Sbjct: 124 ERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALLLERLNMEYGKKSNLQFSVYP 177
Score = 89.4 bits (212), Expect = 2e-19
Identities = 38/50 (76%), Positives = 44/50 (88%)
Frame = +3
Query: 321 NWSSAIYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
N ++YPAPQVST+VVEPYNS+LTTH TL++SDC FMVDNEA YDICRR
Sbjct: 170 NLQFSVYPAPQVSTSVVEPYNSVLTTHATLDNSDCTFMVDNEACYDICRR 219
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 91.9 bits (218), Expect = 4e-20
Identities = 44/114 (38%), Positives = 64/114 (56%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
K+VPRAVLVDLEP +D ++G + LF P+ +I G+ A N +A+GHYT G E+ VL
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
D +R+ A+ C LQGF + H LL+ ++ +Y + F P
Sbjct: 118 DVVRREAEACDALQGFQLTHSLGGGTGSGMGTLLLSKIREEYPDRMMATFSVAP 171
Score = 48.8 bits (111), Expect = 4e-07
Identities = 21/43 (48%), Positives = 30/43 (69%)
Frame = +3
Query: 333 AIYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDI 461
++ PAP+ S VVEPYN+ L+ H +E+SD F +DNEA+ I
Sbjct: 168 SVAPAPKSSDTVVEPYNATLSMHQLVENSDETFCIDNEALSSI 210
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 69.7 bits (163), Expect = 2e-13
Identities = 38/107 (35%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVYL 175
+++PRA+L+DLEP VV+ + TY L++PE ++ K A NN+A G Y+ + I
Sbjct: 59 RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YSHAERIFED 117
Query: 176 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKK 316
++D I + AD L+GF + H L+ERL+ Y KK
Sbjct: 118 IMDMIDREADGSDSLEGFSLLHSIAGGTGSGLGSFLLERLNDRYPKK 164
Score = 32.3 bits (70), Expect = 0.038
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 333 AIYPAPQ-VSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDI 461
+++P Q VS VV+PYNS+L ++D ++DN A+ I
Sbjct: 170 SVFPNSQSVSDVVVQPYNSLLALKRLTLNADSVVVLDNAALAHI 213
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.12
Identities = 22/79 (27%), Positives = 34/79 (43%)
Frame = +3
Query: 189 SASSLTSVPVCKDS*SSTPSVEVPALGSLTY*WSVSPLTTARSLNWSSAIYPAPQVSTAV 368
S++ +S P+ S S T S +P G+ S +P+T SS +T+
Sbjct: 377 SSTGTSSSPLLSTSTSCTTSTSIPPTGN-----STTPVTPTVPPTSSSTPLTTTNCTTST 431
Query: 369 VEPYNSMLTTHTTLEHSDC 425
PY S T T L ++C
Sbjct: 432 SVPYTSTPVTSTPLATTNC 450
Score = 25.4 bits (53), Expect = 4.4
Identities = 19/82 (23%), Positives = 36/82 (43%)
Frame = +3
Query: 183 TESASSLTSVPVCKDS*SSTPSVEVPALGSLTY*WSVSPLTTARSLNWSSAIYPAPQVST 362
T + ++ TS+P +STP S + ++ +P+T++ SS + V+T
Sbjct: 470 TTNCTTSTSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTT 529
Query: 363 AVVEPYNSMLTTHTTLEHSDCA 428
S+L T T + + A
Sbjct: 530 TNCTTSTSVLYTSTPVTSTPLA 551
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 3.3
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 84 NNCLYVPVRASSTTVGSRSTKTARGT 7
N+ +Y PV +SSTT S ST + T
Sbjct: 740 NDAVYYPVSSSSTTTTSTSTGSVTTT 765
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 3.3
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +3
Query: 183 TESASSLTSVPVCKDS*--SSTPSVEVPALGSLTY*WSVSPLTTARSLNWSSAIYPAPQV 356
T S TS P+ + SSTP + AL S T P+T++ LN S+ I + V
Sbjct: 2545 TSSTVVNTSTPITSSTVVNSSTPITSLTALNSST------PITSSSVLNSSTPITSSTVV 2598
Query: 357 STAVVEPYNSMLTTHTTLEHS 419
+T+ ++++ + T + S
Sbjct: 2599 NTSTPITSSTVVNSSTPITSS 2619
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.0 bits (52), Expect = 5.8
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +1
Query: 244 LRWRYRLWVHLLIDGASL 297
+ WR+ W+ L++ G SL
Sbjct: 192 ISWRWEFWILLMLSGVSL 209
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.0 bits (52), Expect = 5.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +2
Query: 296 SVDYGKKSKLEFGHLPRASGFHCRRRALQLYAHH 397
+ D S F +P+A GFH RR A + H
Sbjct: 1305 TTDVDSSSASFFLEIPKALGFHRRREAQKFRNQH 1338
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 5.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 275 YLLMERLSVDYGKKSKLEFGHLPRASGFH 361
YLL E + G+K K F LP A+G H
Sbjct: 268 YLLNEDMIYMVGRKPKRSFFALPWAAGSH 296
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,922,589
Number of Sequences: 5004
Number of extensions: 37115
Number of successful extensions: 110
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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