Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2255
(470 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0058 + 7879859-7879951,7880844-7881078,7881165-7881535,788... 178 2e-45
07_03_0994 + 23190344-23190456,23191367-23191581,23191663-231918... 178 2e-45
03_05_0974 + 29324025-29324117,29325064-29325298,29325385-293257... 178 2e-45
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624... 169 1e-42
05_04_0306 + 20058640-20059159,20060406-20060819,20060921-200611... 100 7e-22
01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349 100 7e-22
06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379 99 9e-22
03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998 98 3e-21
03_01_0034 + 318432-318825,318902-319851 97 6e-21
02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467 97 6e-21
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635... 89 2e-18
03_05_0575 + 25747813-25748206,25748567-25748614,25750296-257505... 82 3e-16
05_01_0412 - 3248405-3248458,3248533-3248637,3248950-3249078,324... 66 2e-11
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 31 0.62
10_03_0016 - 7099862-7099967,7100059-7100357,7101862-7102171,710... 29 1.9
12_02_0399 - 18600444-18600591,18600626-18601656 28 3.3
07_03_0483 - 18605176-18606118,18606353-18606482,18606609-18606738 28 3.3
06_03_0735 - 23987349-23989196 27 5.8
>11_02_0058 +
7879859-7879951,7880844-7881078,7881165-7881535,
7881648-7882304
Length = 451
Score = 178 bits (434), Expect = 2e-45
Identities = 86/114 (75%), Positives = 92/114 (80%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
KHVPRAV VDLEPTV+DE RTG YRQLFHPEQLI+GKEDAANN+ARGHYTIGKEIV L L
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
DRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F P
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173
Score = 80.6 bits (190), Expect = 6e-16
Identities = 33/45 (73%), Positives = 42/45 (93%)
Frame = +3
Query: 336 IYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
+YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR
Sbjct: 171 VYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRR 215
>07_03_0994 +
23190344-23190456,23191367-23191581,23191663-23191862,
23192420-23192928,23193048-23193363
Length = 450
Score = 178 bits (433), Expect = 2e-45
Identities = 83/114 (72%), Positives = 93/114 (81%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
KHVPRA+ VDLEPTV+DE RTG+YRQLFHPEQLI+GKEDAANN+ARGHYT+GKEIV L L
Sbjct: 60 KHVPRAIFVDLEPTVIDEVRTGSYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCL 119
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
DR+RKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F P
Sbjct: 120 DRVRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYP 173
Score = 82.2 bits (194), Expect = 2e-16
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +3
Query: 336 IYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
IYP+PQVSTAVVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR
Sbjct: 171 IYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRR 215
>03_05_0974 +
29324025-29324117,29325064-29325298,29325385-29325755,
29325864-29326520
Length = 451
Score = 178 bits (433), Expect = 2e-45
Identities = 86/114 (75%), Positives = 91/114 (79%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
KHVPRAV VDLEPTV+DE RTG YRQLFHPEQLI GKEDAANN+ARGHYTIGKEIV L L
Sbjct: 60 KHVPRAVFVDLEPTVIDEVRTGCYRQLFHPEQLINGKEDAANNFARGHYTIGKEIVDLCL 119
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
DRIRKLAD CTGLQGFL+F+ LL+ERLSVDYGKKSKL F P
Sbjct: 120 DRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYP 173
Score = 80.6 bits (190), Expect = 6e-16
Identities = 33/45 (73%), Positives = 42/45 (93%)
Frame = +3
Query: 336 IYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
+YP+PQVST+VVEPYNS+L+TH+ LEH+D A ++DNEAIYDICRR
Sbjct: 171 VYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRR 215
>03_02_0186 -
6243487-6243799,6243892-6244400,6244495-6244557,
6245482-6245681,6246125-6246519,6246776-6246888
Length = 530
Score = 169 bits (410), Expect = 1e-42
Identities = 79/119 (66%), Positives = 92/119 (77%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
KHVPRA+ VDLEPTV+DE +TG YRQLFHPEQLI+ KEDAANN+ARGHYT+G+E+V L L
Sbjct: 120 KHVPRALFVDLEPTVIDEVKTGPYRQLFHPEQLISYKEDAANNFARGHYTVGREVVDLCL 179
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLPRASGF 358
DR+RKLAD CTGLQGFL+F+ LL+ERLSVDYG+KSKL F P F
Sbjct: 180 DRLRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGRKSKLGFTIYPSPQYF 238
Score = 66.1 bits (154), Expect = 1e-11
Identities = 26/40 (65%), Positives = 36/40 (90%)
Frame = +3
Query: 351 QVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
++STAVVEPYNS+L+TH+ +EH+D ++DNEAIYDIC+R
Sbjct: 257 KISTAVVEPYNSVLSTHSLIEHTDVVVLLDNEAIYDICKR 296
>05_04_0306 +
20058640-20059159,20060406-20060819,20060921-20061190,
20062179-20062849
Length = 624
Score = 100 bits (239), Expect = 7e-22
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
+ VPRAVL+DLEP +D RTG Y Q+F P+ + G+ A NN+A+GHYT G E++ VL
Sbjct: 238 RFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 297
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
D +RK A+ C LQGF + H LL+ ++ +Y + L F P
Sbjct: 298 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 351
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +3
Query: 333 AIYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R
Sbjct: 348 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR 393
>01_02_0004 - 10097759-10098438,10098973-10099242,10099956-10100349
Length = 447
Score = 100 bits (239), Expect = 7e-22
Identities = 47/114 (41%), Positives = 66/114 (57%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
+ VPRAVL+DLEP +D RTG Y Q+F P+ + G+ A NN+A+GHYT G E++ VL
Sbjct: 58 RFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
D +RK A+ C LQGF + H LL+ ++ +Y + L F P
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +3
Query: 333 AIYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR 213
>06_03_1086 - 27494238-27494914,27495471-27495740,27495986-27496379
Length = 446
Score = 99 bits (238), Expect = 9e-22
Identities = 46/114 (40%), Positives = 67/114 (58%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
++VPRAVL+DLEP +D R+G Y Q+F P+ + G+ A NN+A+GHYT G E++ VL
Sbjct: 58 RYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
D +RK A+ C LQGF + H LL+ ++ +Y + L F P
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +3
Query: 333 AIYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR 213
>03_06_0176 + 32158462-32158855,32159960-32160229,32160328-32160998
Length = 444
Score = 98.3 bits (234), Expect = 3e-21
Identities = 45/114 (39%), Positives = 67/114 (58%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
++VPRAVL+DLEP +D R+G + Q+F P+ + G+ A NN+A+GHYT G E++ VL
Sbjct: 58 RYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
D +RK A+ C LQGF + H LL+ ++ +Y + L F P
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +3
Query: 333 AIYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR 213
>03_01_0034 + 318432-318825,318902-319851
Length = 447
Score = 97.1 bits (231), Expect = 6e-21
Identities = 45/114 (39%), Positives = 65/114 (57%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
+ VPRAVL+DLEP +D R+G Y +F P+ + G+ A NN+A+GHYT G E++ VL
Sbjct: 58 RFVPRAVLMDLEPGTMDSVRSGPYGHIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVL 117
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
D +RK A+ C LQGF + H LL+ ++ +Y + L F P
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +3
Query: 333 AIYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR 213
>02_01_0499 + 3619909-3620302,3621123-3621392,3621788-3622467
Length = 447
Score = 97.1 bits (231), Expect = 6e-21
Identities = 45/114 (39%), Positives = 66/114 (57%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
+ VPRAVL+DLEP +D R+G + Q+F P+ + G+ A NN+A+GHYT G E++ VL
Sbjct: 58 RFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 182 DRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKKSKLEFGHLP 343
D +RK A+ C LQGF + H LL+ ++ +Y + L F P
Sbjct: 118 DVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFP 171
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +3
Query: 333 AIYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R
Sbjct: 168 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR 213
>01_06_1060 +
34162161-34162554,34162613-34162675,34163262-34163531,
34163944-34164623
Length = 468
Score = 88.6 bits (210), Expect = 2e-18
Identities = 39/75 (52%), Positives = 52/75 (69%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
+ VPRAVL+DLEP +D RTG Y Q+F P+ + G+ A NN+A+GHYT G E++ VL
Sbjct: 58 RFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 182 DRIRKLADQCTGLQG 226
D +RK A+ C LQG
Sbjct: 118 DVVRKEAENCDCLQG 132
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +3
Query: 333 AIYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R
Sbjct: 189 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR 234
>03_05_0575 +
25747813-25748206,25748567-25748614,25750296-25750565,
25750658-25751334
Length = 462
Score = 81.8 bits (193), Expect = 3e-16
Identities = 36/74 (48%), Positives = 50/74 (67%)
Frame = +2
Query: 2 KHVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVYLVL 181
+HVPRAVL+DLEP +D R+G +F P+ + G+ A NN+A+GHYT G E++ VL
Sbjct: 58 RHVPRAVLMDLEPGTMDSLRSGPIGGIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVL 117
Query: 182 DRIRKLADQCTGLQ 223
D +RK A+ C LQ
Sbjct: 118 DVVRKEAENCDCLQ 131
Score = 59.3 bits (137), Expect = 2e-09
Identities = 23/46 (50%), Positives = 36/46 (78%)
Frame = +3
Query: 333 AIYPAPQVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAIYDICRR 470
+++P+P+VS VVEPYN+ L+ H +E++D ++DNEA+YDIC R
Sbjct: 184 SVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFR 229
>05_01_0412 -
3248405-3248458,3248533-3248637,3248950-3249078,
3249279-3249353,3249520-3249624,3249714-3249767,
3249970-3250370,3250583-3250694,3250886-3251086,
3251844-3251972
Length = 454
Score = 65.7 bits (153), Expect = 2e-11
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Frame = +2
Query: 5 HVPRAVLVDLEPTVVDEARTGTYRQLFHPEQLITGKE--DAANNYARGHYTIGKEIVYLV 178
++PRA+LVDLEP V++ + YR L++ E + + A NN+A G++ G+++V +
Sbjct: 60 YIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQVVDDI 118
Query: 179 LDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXYLLMERLSVDYGKK 316
+D I + AD L+GF++ H L+E L+ Y KK
Sbjct: 119 MDMIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKK 164
Score = 35.5 bits (78), Expect = 0.022
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Frame = +3
Query: 309 ARSLNWSSAIYPAP-QVSTAVVEPYNSMLTTHTTLEHSDCAFMVDNEAI 452
++ L + +++P + S VV+PYNS+LT ++DC ++DN A+
Sbjct: 162 SKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTAL 210
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 30.7 bits (66), Expect = 0.62
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Frame = -1
Query: 353 LRRGVDGRTPV*TSCRSQRRDAPSISK*TQSRYLHRRSGRSGILADRYTGQRACGFCPK- 177
+R V R+ V S + + + T + LH + RSG ADR+T C K
Sbjct: 273 MRASVAPRSSVPASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKL 332
Query: 176 PNIRFPF 156
P PF
Sbjct: 333 PGFHHPF 339
>10_03_0016 -
7099862-7099967,7100059-7100357,7101862-7102171,
7104402-7105054,7105266-7105554,7106549-7106634
Length = 580
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 82 VSSRTTYYW*GRCGQQLCPWSLHHWK 159
VS+RTTY +C Q CPW +H +K
Sbjct: 239 VSNRTTYKV--KCTQAGCPWRVHGYK 262
>12_02_0399 - 18600444-18600591,18600626-18601656
Length = 392
Score = 28.3 bits (60), Expect = 3.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 82 VSSRTTYYW*GRCGQQLCPWSLHHWK 159
+S+RTTY +C Q CPW +H +K
Sbjct: 240 ISNRTTYDV--KCTQAGCPWRVHGYK 263
>07_03_0483 - 18605176-18606118,18606353-18606482,18606609-18606738
Length = 400
Score = 28.3 bits (60), Expect = 3.3
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -1
Query: 155 QWCSDHGHSCWPHLP 111
++ S+HGHSCW +P
Sbjct: 26 RYISEHGHSCWSSVP 40
>06_03_0735 - 23987349-23989196
Length = 615
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 254 LHRRSGRSGILADRYTGQRACGF 186
LH R+ R+G+LADRY F
Sbjct: 60 LHGRAARAGLLADRYLANALLAF 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,433,684
Number of Sequences: 37544
Number of extensions: 280950
Number of successful extensions: 830
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -