Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2255
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.0  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   6.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   6.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.8  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 186 ESASSLTSVPVCKDS*SSTPSVEVPALGSLTY*WS 290
           +S SS   V   ++S SS+PS+++   G L   WS
Sbjct: 357 QSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWS 391


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 324 WSSAIYPAPQV 356
           W S IYP+P V
Sbjct: 70  WLSPIYPSPMV 80


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 324 WSSAIYPAPQV 356
           W S IYP+P V
Sbjct: 70  WLSPIYPSPMV 80


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 95   VLDETTVCMCQCGPHQQQ*VQDRPRQH 15
            V+  TT+   Q   +QQQ +Q +P ++
Sbjct: 1276 VIAPTTITSSQSPGNQQQTIQTQPSRN 1302


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 8/26 (30%), Positives = 10/26 (38%)
 Frame = -1

Query: 194 CGFCPKPNIRFPFQWCSDHGHSCWPH 117
           C  C +    +    C D G   WPH
Sbjct: 560 CDQCEEYEYVYDEYTCMDCGPGKWPH 585


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,172
Number of Sequences: 438
Number of extensions: 2742
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)