Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2253
         (511 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    27   1.6  
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb...    27   2.2  
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||...    27   2.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPAC15A10.02 |taf12||transcription factor TFIID complex subunit ...    25   6.6  
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch...    25   6.6  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    25   8.7  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = -3

Query: 491  STSQLRV*RGRSIRRWLEPREQSMSRKMVI 402
            STSQ R  RG+SI   L  R+ SMS K+ I
Sbjct: 1943 STSQKRSLRGKSILNVLHSRKLSMSSKVDI 1972


>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 323

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 458 SIRRWLEPREQSMSRKMVIHERL--WTSKKILRKQLEKWSWSQPEMQHKRTMVQWRTNML 285
           ++ +++E R++ M  ++  +ERL  W    I R+  E+ S    E+Q  R + +W    L
Sbjct: 48  ALEKYIEERDRKMKYEIECNERLQGWKKLAIEREISEEQS---GEVQFPRWIDEWANTKL 104

Query: 284 G 282
           G
Sbjct: 105 G 105


>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 247

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 458 SIRRWLEPREQSMSRKMVIHERL--WTSKKILRKQLEKWSWSQPEMQHKRTMVQWRTNML 285
           ++ +++E R++ M  ++  +ERL  W    I R+  E+ S    E+Q  R + +W    L
Sbjct: 48  ALEKYIEERDRKMKYEIECNERLQGWKKLAIEREISEEQS---GEVQFPRWIDEWANTKL 104

Query: 284 G 282
           G
Sbjct: 105 G 105


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
 Frame = +1

Query: 91  HTIAAPAVV---TKTIXXXXXXXXXXXTHTDHGGHIAAYGAAPVFTKTIAAPAVSLCCCT 261
           HT +AP  +   T +            THT  GG  AA GAA   T T     ++    T
Sbjct: 167 HTFSAPYTISEETPSCSTENDSLPLTATHTITGGEDAATGAAVTNTTT---THITTSTNT 223

Query: 262 SILICYWP-SIFVRHCT 309
           S +I   P S+F+  CT
Sbjct: 224 STVIPSNPNSVFLVDCT 240


>SPAC15A10.02 |taf12||transcription factor TFIID complex subunit A
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -1

Query: 199 RRQRCGHRDRCELSKKRPKTQLD*WF*LPQQEPR*CGCKPREQLRGDHQRGLRLQRTEQR 20
           RRQ  GH    +L  ++   QL     L Q  P     +PR QL    Q  L ++  + +
Sbjct: 68  RRQLQGHAQSGQLPNQQLLQQLQSNGALQQGTPEPSNTRPRPQLNAQEQTMLLVRHRQLQ 127

Query: 19  SA 14
           +A
Sbjct: 128 TA 129


>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 392 LWTSKKILRKQLEKWSWSQP 333
           LWT +KI+    E +SW  P
Sbjct: 102 LWTDEKIMSFMNENYSWFMP 121


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 408 HLSRHTLLTGLQPSPNTPPTLHPQLRRTSAP 500
           H+S  T  + L PSP +    HP + + ++P
Sbjct: 353 HVSNSTNKSSLHPSPTSLRVAHPIIPQRASP 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,703,810
Number of Sequences: 5004
Number of extensions: 29932
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)