Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2253
(511 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 31 0.71
03_06_0505 - 34397054-34397087,34397127-34397474,34397650-343977... 30 1.2
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 29 1.6
02_02_0275 + 8478374-8478706 29 2.2
04_03_0904 + 20717005-20718087 29 2.9
10_08_0679 + 19842113-19842607,19843770-19843962,19845137-19845753 28 3.8
10_05_0106 - 9220354-9220812,9220975-9221124 28 3.8
12_02_1071 + 25824311-25824460,25824774-25824857,25825168-258252... 28 5.0
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 28 5.0
04_01_0208 + 2596110-2596928 28 5.0
08_02_1418 - 26931896-26932339,26932435-26932668,26932805-269331... 27 6.6
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436... 27 6.6
01_01_0840 - 6557931-6558377 27 6.6
12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686 27 8.8
08_02_0478 + 17621678-17623768 27 8.8
06_01_0376 + 2709254-2711267,2711311-2711450 27 8.8
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 30.7 bits (66), Expect = 0.71
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = -2
Query: 189 DVATVIGVS*VRRDRRHSWTDGFSYHSRSRDSVAVSQGSSSEETTSAD 46
++A ++G+S R RRHS +GFSY S++++ + S + E D
Sbjct: 787 EMALLVGMSPNER-RRHSKKNGFSYRSQAQNVIRKSNSNGIVENNEHD 833
>03_06_0505 -
34397054-34397087,34397127-34397474,34397650-34397757,
34397847-34398161,34399027-34399442,34399531-34400946
Length = 878
Score = 29.9 bits (64), Expect = 1.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -1
Query: 67 RGDHQRGLRLQRTEQRSAWC 8
RGD QR LRL + QR +WC
Sbjct: 111 RGDWQRSLRLFKYMQRQSWC 130
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 147 RRHSWTDGFSYHSRSRDSVAVSQGSSSEETTSAD 46
R HS D +HSRSRD+ A + GS + +D
Sbjct: 181 RHHSSQDHARHHSRSRDTGAEANGSRASTREDSD 214
>02_02_0275 + 8478374-8478706
Length = 110
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Frame = +3
Query: 393 PLMDHHLSRHTLLTGL---QPSPNTPPTLHPQLRRTSAPVV 506
P++ HH H ++ QP P PP P RTS V
Sbjct: 35 PVLHHHRRLHDMVAAAVVSQPPPRPPPPAAPAAARTSGTAV 75
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 441 QPSPNTPPTLHPQLRRTSAP 500
QP PN PPT PQ + T P
Sbjct: 252 QPKPNPPPTYKPQPKPTPTP 271
>10_08_0679 + 19842113-19842607,19843770-19843962,19845137-19845753
Length = 434
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 190 AAYGAAPVFTKTIAAPAVSLCCCTS 264
AA AAP T + APAV+ CC +S
Sbjct: 92 AAAAAAPPATASSTAPAVASCCSSS 116
>10_05_0106 - 9220354-9220812,9220975-9221124
Length = 202
Score = 28.3 bits (60), Expect = 3.8
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -1
Query: 499 GAEVRRNCGCSVGGVFGDG-WSPVSR 425
G + NCG SV G+ GDG W+ SR
Sbjct: 125 GGKEEANCGPSVDGIGGDGIWASPSR 150
>12_02_1071 +
25824311-25824460,25824774-25824857,25825168-25825246,
25825334-25825428,25825940-25826067,25826160-25826393,
25826509-25826683,25826716-25826748,25827292-25827375,
25827929-25828169,25828275-25828453,25828800-25828873,
25830800-25830950,25831178-25831252,25831748-25831778,
25832107-25832339
Length = 681
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 393 PLMDHHLSRHTLLTGLQPSPNTPPTLH 473
P+MD H H+ + L PSPN P L+
Sbjct: 534 PMMDQHQGGHSEPSRLFPSPNPYPDLY 560
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +1
Query: 253 CCTSILICYWPSIFVRHCTIV--RLCCISGCDQDHFSSCFLSIFLLVH 390
C + C ++R+ ++ R C I+ QD+F CF+ + ++H
Sbjct: 489 CIMLLECCSQERTYLRYYGLLGQRFCMINKVYQDNFEKCFVQQYSMIH 536
>04_01_0208 + 2596110-2596928
Length = 272
Score = 27.9 bits (59), Expect = 5.0
Identities = 17/48 (35%), Positives = 19/48 (39%)
Frame = -1
Query: 442 WSPVSRVCRERW*SMSGCGRVRRY*GNSWRNGLGHNRRCSISVRWCSG 299
W P+ R E M G R G WR H +R S RW SG
Sbjct: 49 WRPLRRASSEEE-VMPGMRAASRSRGRWWRRRPAHGKRDSGGRRWNSG 95
>08_02_1418 -
26931896-26932339,26932435-26932668,26932805-26933110,
26933462-26933644,26934386-26934493
Length = 424
Score = 27.5 bits (58), Expect = 6.6
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +1
Query: 388 HNRSWITIFRDILCSRGSSHRRILRPRYTRSCDVLPRLLSL 510
HNR + F +ILCSR S R R + P L +
Sbjct: 294 HNRGLVQNFIEILCSRIPSSRNNFRAKVKEDSATFPSSLGM 334
>07_03_1777 +
29442542-29442652,29443394-29443455,29443540-29443681,
29444043-29444261,29444374-29444440,29444883-29445288,
29445669-29445816,29445903-29446063,29446320-29446419,
29446522-29446596,29446677-29446811,29446921-29447013,
29447475-29447657,29447738-29447842,29448614-29448772,
29449142-29449186,29449296-29449517,29449775-29449881,
29449971-29450027,29450132-29450213,29450291-29450455
Length = 947
Score = 27.5 bits (58), Expect = 6.6
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -3
Query: 365 KQLEKWSWSQPEMQHKRTMVQW 300
K LE+WS + H++ +VQW
Sbjct: 343 KDLEEWSENPESFHHEQNLVQW 364
>01_01_0840 - 6557931-6558377
Length = 148
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -1
Query: 199 RRQRCGHRDRCEL 161
RR RCGHR RC L
Sbjct: 54 RRPRCGHRRRCHL 66
>12_02_1090 - 25994366-25995410,25995632-25995971,25997266-25997686
Length = 601
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -1
Query: 508 ATTGAEVRRNCGCSVGGVFGDGWSP 434
A G EVRR GC GG G G P
Sbjct: 4 AAAGGEVRRRGGCCGGGGGGGGLFP 28
>08_02_0478 + 17621678-17623768
Length = 696
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 141 HSWTDGFSYHSRSRDSVAVSQGSSSEETTSADYAYSA--QSNDQLGV 7
+S G+S H S D++ + SE + +YA+SA +S+ +L V
Sbjct: 370 NSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAV 416
>06_01_0376 + 2709254-2711267,2711311-2711450
Length = 717
Score = 27.1 bits (57), Expect = 8.8
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = +3
Query: 405 HHLSRHTLLTGL-QPSPNTPPTLHP-QLRRTSAPV 503
H H L L PSP +PP HP QL R P+
Sbjct: 15 HRSVHHAHLAALLNPSPRSPPHPHPLQLHRRHLPL 49
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,400,553
Number of Sequences: 37544
Number of extensions: 250386
Number of successful extensions: 1020
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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