Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2253
         (511 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-14|CAB60362.1|  109|Caenorhabditis elegans Hypothetical...    30   1.1  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   2.6  
U40935-5|AAM29686.1|  441|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U40935-4|AAM29687.1|  436|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL110490-10|CAB54446.1|  430|Caenorhabditis elegans Hypothetical...    28   4.5  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U40954-7|AAB52654.2|  145|Caenorhabditis elegans Hypothetical pr...    27   6.0  
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AL110485-14|CAB60362.1|  109|Caenorhabditis elegans Hypothetical
           protein Y46G5A.20 protein.
          Length = 109

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = -2

Query: 129 DGFSYHSRSRDSVAVSQGSSSEETTSADYAYSAQSNDQLG 10
           D F  H+  R S + S  SSS  T+S+  + S++S+DQ+G
Sbjct: 28  DSFPRHAPRRRSSS-SSSSSSSSTSSSSSSNSSESDDQVG 66


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/80 (22%), Positives = 37/80 (46%)
 Frame = -2

Query: 243 DGRSSNGLSEDWSSTVGSDVATVIGVS*VRRDRRHSWTDGFSYHSRSRDSVAVSQGSSSE 64
           +  SS+  S   SS+  S  ++          ++H+      +H ++  S + S  SSS 
Sbjct: 158 ESSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAKKHLKKHHKKAESSSSSSSSSSSS 217

Query: 63  ETTSADYAYSAQSNDQLGVH 4
            ++S+  + S++S D+   H
Sbjct: 218 SSSSSSSSSSSESEDEKHHH 237


>U40935-5|AAM29686.1|  441|Caenorhabditis elegans Hypothetical
           protein F31E3.2a protein.
          Length = 441

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 420 HTLLTGLQPSPNTPPTLHPQLR 485
           H LLTG+ P PN+  T H  L+
Sbjct: 318 HILLTGIYPYPNSEATHHANLK 339


>U40935-4|AAM29687.1|  436|Caenorhabditis elegans Hypothetical
           protein F31E3.2b protein.
          Length = 436

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 420 HTLLTGLQPSPNTPPTLHPQLR 485
           H LLTG+ P PN+  T H  L+
Sbjct: 318 HILLTGIYPYPNSEATHHANLK 339


>AL110490-10|CAB54446.1|  430|Caenorhabditis elegans Hypothetical
           protein Y48B6A.10 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
 Frame = -3

Query: 437 PREQSMSRKMVIHERLWTSK-----KILRKQLEKWSWSQPEMQHKRTMVQW 300
           PRE ++ +++  +ER   S+     K L K  E++ +  PEM  K+ +VQW
Sbjct: 135 PREGAVGKRLNKNERQRASERARRAKALEKDFEQFGYL-PEMTTKKKVVQW 184


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 250 CCCTSILICYWPSIFVRHCTIVRLCCISGC 339
           CCC     C       R CT  R CC  GC
Sbjct: 95  CCCRRCCTCCRTCCCTRCCTCCRPCC-CGC 123


>Z66499-4|CAA91301.1|  164|Caenorhabditis elegans Hypothetical
           protein T01B7.8 protein.
          Length = 164

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 250 CCCTSILICYWPSIFVRHCTIVRLCCISGC 339
           CCC     C       R CT  R CC  GC
Sbjct: 93  CCCRRCCTCCRTCCCTRCCTCCRPCC-CGC 121


>U58760-7|AAK31463.1|  188|Caenorhabditis elegans Hypothetical
           protein C27A2.5 protein.
          Length = 188

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 250 CCCTSILICYWPSIFVRHCTIVRLCCISGC 339
           CCC     C       R CT  R CC  GC
Sbjct: 94  CCCRRCCTCCRTCCCTRCCTCCRPCC-CGC 122


>U55854-7|AAK68158.1|  166|Caenorhabditis elegans Hypothetical
           protein C04G6.10 protein.
          Length = 166

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 250 CCCTSILICYWPSIFVRHCTIVRLCCISGC 339
           CCC     C       R CT  R CC  GC
Sbjct: 94  CCCRRCCTCCRTCCCTRCCTCCRPCC-CGC 122


>U55854-6|AAK68161.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G6.7 protein.
          Length = 197

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +1

Query: 250 CCCTSILICYWPSIFVRHCTIVRLCCISGC 339
           CCC     C       R CT  R CC  GC
Sbjct: 95  CCCRRCCTCCRTCCCTRCCTCCRPCC-CGC 123


>U40954-7|AAB52654.2|  145|Caenorhabditis elegans Hypothetical
           protein ZK813.1 protein.
          Length = 145

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 20/42 (47%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
 Frame = -2

Query: 156 RRDRRHSWTDGFSYHSRSRDSVAVSQGSSSEETTS--ADYAY 37
           R  RRHS +   S  SRSR     S GSSS E+ S   DY Y
Sbjct: 64  RHGRRHSDSSDSSSESRSRS----SSGSSSSESRSYERDYYY 101


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 211 LEQHRRQRCGHRDRCELSKKRP 146
           +E HRR+RC  + RC  + + P
Sbjct: 320 VECHRRRRCSRKQRCHTTTQPP 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,831,837
Number of Sequences: 27780
Number of extensions: 189741
Number of successful extensions: 667
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)