Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2251
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.47 
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   1.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   1.9  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.5  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    26   3.3  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   4.4  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   4.4  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 320 SCR--FLGELCHSDTSAEGCH*ICEAILGRRSR*EEEVEATPAHTGTPATE 466
           SC+  F  +LCH D   E     C+   G+R    E V  +P H G P  E
Sbjct: 707 SCKTHFCEKLCHPDGECESS---CKKECGKRRMYCEHVCQSPCHAGHPCDE 754


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 113 SALPSLIGRRLRHYSLRPQRILLTPP 36
           SAL  L  R L H  ++PQ +LL PP
Sbjct: 143 SALQFLRSRSLIHRDVKPQNLLLQPP 168


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +3

Query: 126 MTTSHCVKEKALRYVENVSNSRELNLIDGVSLIGQGSPRSARS 254
           MT  H  K + LR++EN        L D V L+ +GSP S+ S
Sbjct: 1   MTEHHTPKSRILRFLEN-QYVYLCTLNDYVQLVLRGSPASSYS 42


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 410 ATFFQGSLRRFNGTLRQTYLNDKVLQEIGNSVQKSEVYLI 291
           +TF    LR F+ T    YL+D  L+EI   V  S + L+
Sbjct: 476 STFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGSTITLV 515


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 197 EFSRIRDIFHVSQSFFLD 144
           E SRI D+ H+ + FF+D
Sbjct: 508 ELSRISDLLHIKKHFFVD 525


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 419 EEVEATPAHTGTPATEDPVPH 481
           E   A P H G+P TE P P+
Sbjct: 527 ENPPAMPDHNGSPTTEPPKPN 547


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 395 GSLRRFNGTLRQTYLNDKVLQEIGNSVQKSEVYLILPG 282
           G+ +RFN    +TYL +    ++      S+V L + G
Sbjct: 271 GNSKRFNNENEETYLKESGFHDLEEEASDSKVVLKIKG 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,118,456
Number of Sequences: 5004
Number of extensions: 40719
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)