Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2251
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0159 - 13325949-13326839                                         29   2.5  
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711...    28   4.4  
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063...    28   5.9  
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18...    28   5.9  
02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314...    27   7.7  
01_07_0294 + 42571700-42573373,42573653-42573720,42573785-425738...    27   7.7  

>01_03_0159 - 13325949-13326839
          Length = 296

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 431 ATPAHTGTPATEDPVPHPRLPRNHCLCPP 517
           A P    TP T  P P P +  +H L PP
Sbjct: 140 AIPPEPMTPPTSSPAPPPAVDNHHRLSPP 168


>02_02_0138 +
           7114949-7115656,7116388-7116435,7116830-7117988,
           7118336-7118424,7118697-7118732
          Length = 679

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 434 TPAHTGTPATEDPVPHPRLPRNHCLCPPSRVL 529
           T A T  P   DP  +P LPR H +C  +R+L
Sbjct: 28  TVAPTPPPTPLDPRGYP-LPRRHLVCAAARIL 58


>08_02_0672 -
           19904353-19904839,19905646-19905704,19906137-19906352,
           19906845-19907422,19907506-19908180,19908263-19908653,
           19909469-19909621,19909727-19909980,19911023-19911479
          Length = 1089

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +2

Query: 437 PAHTGTPATEDPVPHPRLPRNHCLCPP 517
           PA T TP T +P P P LP      PP
Sbjct: 39  PATTPTPLTPNPNPSPTLPPPPMSTPP 65


>05_01_0028 +
           182528-183852,183967-184127,184872-185116,185330-186073
          Length = 824

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = +2

Query: 434 TPAHTGTPATEDPVPHPRLPRNHCLCPP 517
           TP  T TP    P P PR PR H   PP
Sbjct: 64  TPTVT-TPTPPPPPPAPRPPRRHHRIPP 90


>02_01_0432 -
           3144560-3144655,3144792-3144832,3145019-3145094,
           3145465-3145542,3146121-3146208,3146613-3146686,
           3147445-3147579,3147699-3147770,3148239-3148325,
           3148418-3148522,3149028-3149085,3149576-3149634,
           3149960-3150056,3150217-3150317,3150443-3150487,
           3150619-3150681,3151082-3151147,3151286-3151342,
           3151570-3151656,3152063-3152239,3152413-3152625
          Length = 624

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +2

Query: 164 IRGKCLEFSRTQLNRWRQSDRSRLP*ISQVLRAFTRRA-QSQGESSRPQTFGRSCRFLGE 340
           IR K + F+  +    R++   +L      L+A TR + Q + ESS    FG  C FLG 
Sbjct: 311 IRCKLVNFTLARFEELREA-LEKLQLNDAALKAVTRFSMQFEPESSSAMGFGFRCGFLG- 368

Query: 341 LCHSDTSAE 367
           L H +   E
Sbjct: 369 LLHMEIVQE 377


>01_07_0294 +
           42571700-42573373,42573653-42573720,42573785-42573819,
           42573988-42574061,42574491-42574726,42574958-42575044,
           42575356-42575455,42575584-42576003
          Length = 897

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +3

Query: 147 KEKALRYVENVSNSRELNLIDGVSLIGQGSPR 242
           KEK+ +    ++ ++++ L+DGV ++   SPR
Sbjct: 483 KEKSSQAKRKLAKTKKMQLLDGVVVVSTSSPR 514


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,588,630
Number of Sequences: 37544
Number of extensions: 306306
Number of successful extensions: 1001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)