Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2250
         (536 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    24   0.98 
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    24   0.98 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   0.98 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   0.98 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   3.0  

>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +2

Query: 338 KNLGLEYLDLYLIHWPQAFKEGDDLFPKDSEDKFIPSAVDYVDTWGALQALVEKGLTRSI 517
           ++LGL++ + Y +     F   DD F + SED   P   +YV+   +L +++++  T+  
Sbjct: 24  EHLGLKHDNYYELETHIFF---DDAFIRTSEDDNDPHVNEYVE---SLASIIDEAATKVH 77

Query: 518 G 520
           G
Sbjct: 78  G 78


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +2

Query: 338 KNLGLEYLDLYLIHWPQAFKEGDDLFPKDSEDKFIPSAVDYVDTWGALQALVEKGLTRSI 517
           ++LGL++ + Y +     F   DD F + SED   P   +YV+   +L +++++  T+  
Sbjct: 338 EHLGLKHDNYYELETHIFF---DDAFIRTSEDDNDPHVNEYVE---SLASIIDEAATKVH 391

Query: 518 G 520
           G
Sbjct: 392 G 392


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +2

Query: 338 KNLGLEYLDLYLIHWPQAFKEGDDLFPKDSEDKFIPSAVDYVDTWGALQALVEKGLTRSI 517
           ++LGL++ + Y +     F   DD F + SED   P   +YV+   +L +++++  T+  
Sbjct: 571 EHLGLKHDNYYELETHIFF---DDAFIRTSEDDNDPHVNEYVE---SLASIIDEAATKVH 624

Query: 518 G 520
           G
Sbjct: 625 G 625


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 17/61 (27%), Positives = 33/61 (54%)
 Frame = +2

Query: 338 KNLGLEYLDLYLIHWPQAFKEGDDLFPKDSEDKFIPSAVDYVDTWGALQALVEKGLTRSI 517
           ++LGL++ + Y +     F   DD F + SED   P   +YV+   +L +++++  T+  
Sbjct: 571 EHLGLKHDNYYELETHIFF---DDAFIRTSEDDNDPHVNEYVE---SLASIIDEAATKVH 624

Query: 518 G 520
           G
Sbjct: 625 G 625


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 313 HEIRAVERAP*LGRYEDILSFDCSFFKLGSQGVPHLLLIEVDV 185
           H +  ++  P +  +ED++   CS F L    + H L + VD+
Sbjct: 287 HALSGLKAPPGVEHFEDVVHKKCSNFTLPE--IQHNLDVLVDM 327


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,860
Number of Sequences: 336
Number of extensions: 2255
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13097125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)