Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2250
(536 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical ... 187 5e-48
AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical ... 187 5e-48
U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical pr... 136 7e-33
Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical pr... 134 3e-32
U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical pr... 134 3e-32
AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical ... 121 3e-28
Z81088-3|CAB03128.1| 283|Caenorhabditis elegans Hypothetical pr... 101 2e-22
U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical pr... 98 4e-21
U50068-4|AAB37733.1| 287|Caenorhabditis elegans Hypothetical pr... 97 9e-21
Z81088-2|CAB03127.1| 297|Caenorhabditis elegans Hypothetical pr... 87 8e-18
Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical pr... 75 2e-14
U80844-2|AAB37972.1| 134|Caenorhabditis elegans Hypothetical pr... 73 2e-13
U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical pr... 69 2e-12
U39654-1|AAA80407.2| 131|Caenorhabditis elegans Hypothetical pr... 55 3e-08
Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical pr... 29 1.6
Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA hai... 29 1.6
AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone stem-... 29 1.6
Z81107-8|CAB03231.3| 282|Caenorhabditis elegans Hypothetical pr... 29 2.1
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec... 29 2.8
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l... 29 2.8
U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell m... 27 8.6
AY572975-1|AAT77228.1| 580|Caenorhabditis elegans KQT-3 potassi... 27 8.6
AL032648-2|CAA21699.2| 621|Caenorhabditis elegans Hypothetical ... 27 8.6
AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein. 27 8.6
>AL110482-2|CAB60335.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1b protein.
Length = 316
Score = 187 bits (455), Expect = 5e-48
Identities = 84/155 (54%), Positives = 107/155 (69%)
Frame = +2
Query: 68 NNGRTCPVIGLGTWKSKPGEVTQAVKDAIDIGYRHVDCAHIYLNEKEVGDALRAKFEEGT 247
N+G + P IGLGTW+SKPGEV A+K A+ GYRH+DCAH+Y N+KEVG+AL+ +EG
Sbjct: 8 NSGYSIPAIGLGTWQSKPGEVAAAIKTAVAAGYRHIDCAHVYQNQKEVGEALKEILDEGK 67
Query: 248 IKREDIFITSKLWCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGDDLFPKDS 427
+KRE++FITSK+W TFH E I L +L L Y+DL LIHWPQ + EG +LFP
Sbjct: 68 VKREELFITSKVWNTFHSEAKAHENIDIILSDLQLSYVDLMLIHWPQGYAEGAELFPAGE 127
Query: 428 EDKFIPSAVDYVDTWGALQALVEKGLTRSIGLFNF 532
K S VDY++TW A +A + G RSIGL NF
Sbjct: 128 NGKMRYSDVDYLETWKAFEAAQKAGKCRSIGLSNF 162
>AL110482-1|CAB54385.1| 316|Caenorhabditis elegans Hypothetical
protein Y39G8B.1a protein.
Length = 316
Score = 187 bits (455), Expect = 5e-48
Identities = 84/155 (54%), Positives = 107/155 (69%)
Frame = +2
Query: 68 NNGRTCPVIGLGTWKSKPGEVTQAVKDAIDIGYRHVDCAHIYLNEKEVGDALRAKFEEGT 247
N+G + P IGLGTW+SKPGEV A+K A+ GYRH+DCAH+Y N+KEVG+AL+ +EG
Sbjct: 8 NSGYSIPAIGLGTWQSKPGEVAAAIKTAVAAGYRHIDCAHVYQNQKEVGEALKEILDEGK 67
Query: 248 IKREDIFITSKLWCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGDDLFPKDS 427
+KRE++FITSK+W TFH E I L +L L Y+DL LIHWPQ + EG +LFP
Sbjct: 68 VKREELFITSKVWNTFHSEAKAHENIDIILSDLQLSYVDLMLIHWPQGYAEGAELFPAGE 127
Query: 428 EDKFIPSAVDYVDTWGALQALVEKGLTRSIGLFNF 532
K S VDY++TW A +A + G RSIGL NF
Sbjct: 128 NGKMRYSDVDYLETWKAFEAAQKAGKCRSIGLSNF 162
>U55368-5|AAA97992.2| 333|Caenorhabditis elegans Hypothetical
protein T08H10.1 protein.
Length = 333
Score = 136 bits (330), Expect = 7e-33
Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 2/158 (1%)
Frame = +2
Query: 68 NNGRTCPVIGLGTWKSKP-GEVTQAVKDAIDIGYRHVDCAHIYLNEKEVGDALRAKFEEG 244
N G P+ GLGTW+ K E+T A++ A+D GYR +D AH+Y NE +G L G
Sbjct: 9 NTGAQLPLFGLGTWQVKDEAELTVALRAALDAGYRLIDTAHLYQNEHIIGKVLHEYISSG 68
Query: 245 TIKREDIFITSKLWCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGDDLF-PK 421
+KREDIF+TSKL T H P+ V + +++ LK L LEY+DLYLIH P FK + F P
Sbjct: 69 KLKREDIFVTSKLPFTAHAPEDVPKCVESQLKALQLEYIDLYLIHCPFPFKHQEGSFAPL 128
Query: 422 DSEDKFIPSAVDYVDTWGALQALVEKGLTRSIGLFNFN 535
+ + + ++DTW AL+ L ++G +++G+ NF+
Sbjct: 129 MENGELAVTEIAHIDTWRALEKLYKEGKLKALGVSNFS 166
>Z75553-1|CAA99947.2| 320|Caenorhabditis elegans Hypothetical
protein ZC443.1 protein.
Length = 320
Score = 134 bits (325), Expect = 3e-32
Identities = 72/162 (44%), Positives = 98/162 (60%), Gaps = 1/162 (0%)
Frame = +2
Query: 53 VPVI-FNNGRTCPVIGLGTWKSKPGEVTQAVKDAIDIGYRHVDCAHIYLNEKEVGDALRA 229
VP+ +NG P IGLGTW+ E +++A+ GYRH+D A +Y NE ++GDAL
Sbjct: 5 VPIFTLSNGVLMPSIGLGTWQMTGEEGKTVIRNAVLAGYRHIDTATLYQNEHQIGDALAE 64
Query: 230 KFEEGTIKREDIFITSKLWCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGDD 409
F EG +KREDIFIT+K +C PD+VEEA++ SLK L L+Y+DLYL H P + K+ D
Sbjct: 65 LFAEGILKREDIFITTKAFCHEVAPDVVEEALRNSLKRLRLDYVDLYLAHIPASTKD-DG 123
Query: 410 LFPKDSEDKFIPSAVDYVDTWGALQALVEKGLTRSIGLFNFN 535
F D V D W + + GLT++IG+ NFN
Sbjct: 124 SFRSD---------VKVEDIWRGFEKVYGLGLTKAIGVSNFN 156
>U80844-1|AAB37976.1| 317|Caenorhabditis elegans Hypothetical
protein C07D8.6 protein.
Length = 317
Score = 134 bits (325), Expect = 3e-32
Identities = 69/156 (44%), Positives = 96/156 (61%)
Frame = +2
Query: 68 NNGRTCPVIGLGTWKSKPGEVTQAVKDAIDIGYRHVDCAHIYLNEKEVGDALRAKFEEGT 247
+NG PVIGLGTW+S P EV AVK A+ GYR +D A +Y NE+ +G A++ EEG
Sbjct: 11 SNGVEMPVIGLGTWQSSPAEVITAVKTAVKAGYRLIDTASVYQNEEAIGTAIKELLEEGV 70
Query: 248 IKREDIFITSKLWCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGDDLFPKDS 427
+KRE++FIT+K W P +E ++ SLK L LEY+DLYL H P AF DD+
Sbjct: 71 VKREELFITTKAWTHELAPGKLEGGLRESLKKLQLEYVDLYLAHMPAAF--NDDM----- 123
Query: 428 EDKFIPSAVDYVDTWGALQALVEKGLTRSIGLFNFN 535
+ I S V+ D W A+ + GL +++G+ N+N
Sbjct: 124 -SEHIASPVE--DVWRQFDAVYKAGLAKAVGVSNWN 156
>AL110482-3|CAB60336.1| 339|Caenorhabditis elegans Hypothetical
protein Y39G8B.2 protein.
Length = 339
Score = 121 bits (292), Expect = 3e-28
Identities = 60/164 (36%), Positives = 94/164 (57%), Gaps = 5/164 (3%)
Frame = +2
Query: 59 VIFNNGRTCPVIGLGTWKSKPGEVTQAVKDAIDIGYRHVDCAHIYLNEKEVGDALRAKFE 238
V N+G PVIG GTW+ + V+DA++ GYRH+D A + N++EV ++ +
Sbjct: 7 VTLNSGYEMPVIGYGTWQLPKNLAAERVRDALEAGYRHIDSALSFKNQEEVAAGIKDWCK 66
Query: 239 EGTIKREDIFITSKLWCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGD---- 406
++RE++F++SK+W T+H + + I L+ Y+DL +IHWP + E +
Sbjct: 67 IRKVRREELFLSSKIWNTYHSRNRCMQQIDEMLEIFETTYMDLIVIHWPFGWAEDEPPGE 126
Query: 407 -DLFPKDSEDKFIPSAVDYVDTWGALQALVEKGLTRSIGLFNFN 535
L+P+ + K S VDY++TW AL+ G RSIGL NFN
Sbjct: 127 RGLWPRGANGKMRYSDVDYLETWKALEDAHRSGKIRSIGLANFN 170
>Z81088-3|CAB03128.1| 283|Caenorhabditis elegans Hypothetical
protein F53F1.3 protein.
Length = 283
Score = 101 bits (243), Expect = 2e-22
Identities = 60/155 (38%), Positives = 87/155 (56%)
Frame = +2
Query: 68 NNGRTCPVIGLGTWKSKPGEVTQAVKDAIDIGYRHVDCAHIYLNEKEVGDALRAKFEEGT 247
N G CP+IGLGT+K +V + A+ GYR D A +Y NEKE+GDAL +
Sbjct: 6 NTGYDCPLIGLGTYKIIGDQVLPVLDAALTAGYRLFDTAKVYNNEKEIGDALEILLPKHN 65
Query: 248 IKREDIFITSKLWCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGDDLFPKDS 427
+KREDIFIT+K+ + + V++ + SL L Y+D+YLIH+P++F GD +D
Sbjct: 66 LKREDIFITTKMHP--NTVENVKKLVDESLSLLKTSYIDMYLIHYPKSFDYGD----QDP 119
Query: 428 EDKFIPSAVDYVDTWGALQALVEKGLTRSIGLFNF 532
+K + A TW L G RS+G+ +F
Sbjct: 120 MNKTLRIA-----TWNDLWECKNAGKIRSVGVSSF 149
>U21324-6|AAA62562.1| 287|Caenorhabditis elegans Hypothetical
protein C35D10.6 protein.
Length = 287
Score = 97.9 bits (233), Expect = 4e-21
Identities = 57/150 (38%), Positives = 85/150 (56%), Gaps = 1/150 (0%)
Frame = +2
Query: 86 PVIGLGTWKSKPGEVTQAVKDA-IDIGYRHVDCAHIYLNEKEVGDALRAKFEEGTIKRED 262
P+IG+GTW+ + E+ + V DA GYR +D A +Y NE ++G L +KRED
Sbjct: 12 PLIGIGTWQVQKEEILRQVIDAGFKEGYRFIDTAQVYNNEAKIGRILEKLLPANGLKRED 71
Query: 263 IFITSKLWCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGDDLFPKDSEDKFI 442
I+ITSKL + E+I+ SL NL +EYLDL LIHWP G L ++ +K +
Sbjct: 72 IWITSKLAPSNAGVKKARESIEESLSNLKVEYLDLLLIHWP-----GSSLKSENPANKKL 126
Query: 443 PSAVDYVDTWGALQALVEKGLTRSIGLFNF 532
V++W + ++ +G RS+G+ NF
Sbjct: 127 -----RVESWNVMCEMMAEGKLRSVGVSNF 151
>U50068-4|AAB37733.1| 287|Caenorhabditis elegans Hypothetical
protein C01G5.5 protein.
Length = 287
Score = 96.7 bits (230), Expect = 9e-21
Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 2/156 (1%)
Frame = +2
Query: 71 NGRTCPVIGLGTWKSKPGEVTQAVKDAIDIGYRHVDCAHIYLNEKEVGDALRAKFEEGTI 250
NG+ P + LGT+++K ++ AV +A+ +GYR D A Y NEK++G AL+ I
Sbjct: 6 NGQEIPKLALGTYEAKGDQLFAAVDEALKVGYRSFDTAKYYENEKDLGLALKTLLPRHNI 65
Query: 251 KREDIFITSKL--WCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGDDLFPKD 424
EDI++TSK+ + + + +L+ + + SL+ L +YLDL L+H+P+ P D
Sbjct: 66 CSEDIYLTSKVFPYSSKNAAELIRKDVNESLELLDRKYLDLVLVHYPR---------PLD 116
Query: 425 SEDKFIPSAVDYVDTWGALQALVEKGLTRSIGLFNF 532
+ED + + DTW AL+ L +G RSIG+ N+
Sbjct: 117 TEDLNENNKMYRKDTWIALEKLHAEGKIRSIGVSNY 152
>Z81088-2|CAB03127.1| 297|Caenorhabditis elegans Hypothetical
protein F53F1.2 protein.
Length = 297
Score = 87.0 bits (206), Expect = 8e-18
Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 1/156 (0%)
Frame = +2
Query: 68 NNGRTCPVIGLGTWKSKPGEVTQAVKDAIDIGYRHVDCAHIYLNEKEVGDALRAKFEEGT 247
N+G P +G GT+K V A+ A+ GYR D A YLNEKE+G+AL+ +
Sbjct: 16 NSGYNIPFVGFGTYKVTGENVPPAIDAALTAGYRMFDTAKYYLNEKELGEALKILLPKHG 75
Query: 248 IKREDIFITSKLWC-TFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGDDLFPKD 424
+ R D+F+TSK + + + + ++ SL++L +Y+D+YL+H+P+ P D
Sbjct: 76 LSRSDVFLTSKFFPESKNCREACRGFVEESLQSLQTDYIDMYLVHYPK---------PND 126
Query: 425 SEDKFIPSAVDYVDTWGALQALVEKGLTRSIGLFNF 532
S++ + +A + L+ G RSIG+ N+
Sbjct: 127 SDNDDVNNAEYRKIAYEVLEEAKAAGKVRSIGVSNY 162
>Z71181-2|CAA94895.1| 301|Caenorhabditis elegans Hypothetical
protein K07C5.2 protein.
Length = 301
Score = 75.4 bits (177), Expect = 2e-14
Identities = 49/158 (31%), Positives = 85/158 (53%), Gaps = 2/158 (1%)
Frame = +2
Query: 65 FNNGRTCPVIGLGTWKSKPGE-VTQAVKDAIDIGYRHVDCAHIYLNEKEVGDALRAKFEE 241
F++G P IGLG + + + + +++ A+ GYR D A++Y NE +G++L+ +
Sbjct: 14 FSDGYEMPKIGLGISRIETQQDLDVSIEAALKSGYRQFDTANLYKNETFLGNSLKKYLPQ 73
Query: 242 GTIKREDIFITSKL-WCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGDDLFP 418
+ RED+FIT+K+ + + E+ + SL L +Y+DL LIH+P+ G+D
Sbjct: 74 FGLTREDVFITTKVRTLNENTVEETEKQLANSLATLQTDYVDLLLIHYPRDRDTGND--- 130
Query: 419 KDSEDKFIPSAVDYVDTWGALQALVEKGLTRSIGLFNF 532
+D I + + W L+ E G RSIG+ N+
Sbjct: 131 ---DDYEINKSRRKI-VWQTLEKAKESGRVRSIGVSNY 164
>U80844-2|AAB37972.1| 134|Caenorhabditis elegans Hypothetical
protein C07D8.5 protein.
Length = 134
Score = 72.5 bits (170), Expect = 2e-13
Identities = 32/72 (44%), Positives = 47/72 (65%)
Frame = +2
Query: 68 NNGRTCPVIGLGTWKSKPGEVTQAVKDAIDIGYRHVDCAHIYLNEKEVGDALRAKFEEGT 247
+N + P +GLGTW+S +V AVK A+ GY +D A Y NE+ +G A++ EG
Sbjct: 51 SNAHSMPAVGLGTWQSNAEDVISAVKAAVKNGYSLIDTASGYNNEEFIGTAIKEVIAEGV 110
Query: 248 IKREDIFITSKL 283
+KRED+FIT+K+
Sbjct: 111 VKREDLFITTKV 122
>U21308-3|AAB93322.2| 321|Caenorhabditis elegans Hypothetical
protein ZK1290.5 protein.
Length = 321
Score = 69.3 bits (162), Expect = 2e-12
Identities = 57/163 (34%), Positives = 82/163 (50%), Gaps = 1/163 (0%)
Frame = +2
Query: 50 PVPVIFNNGRTCPVIGLGTWKSKPGEVTQAVKDAID-IGYRHVDCAHIYLNEKEVGDALR 226
P V+ NN P+IGLGT S G AV +I GYR +D A Y EK++G A++
Sbjct: 3 PTTVLSNNVEM-PLIGLGTTHSG-GYYHDAVLHSIKKCGYRLIDTAKRYGVEKQLGIAVK 60
Query: 227 AKFEEGTIKREDIFITSKLWCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGD 406
++ RE++F+++KLW D V A +TS + L +YLD+Y+IH PQ
Sbjct: 61 ----NCSVPREEMFLSTKLW-PVDCGDEVYNAFQTSCEKLQTDYLDMYMIHMPQL----P 111
Query: 407 DLFPKDSEDKFIPSAVDYVDTWGALQALVEKGLTRSIGLFNFN 535
D E K TW ++ L E RSIG+ N++
Sbjct: 112 DWIVNQKETK--------EKTWRQMELLYEDEHVRSIGVSNYS 146
>U39654-1|AAA80407.2| 131|Caenorhabditis elegans Hypothetical
protein C56G3.2 protein.
Length = 131
Score = 55.2 bits (127), Expect = 3e-08
Identities = 33/84 (39%), Positives = 47/84 (55%)
Frame = +2
Query: 284 WCTFHRPDLVEEAIKTSLKNLGLEYLDLYLIHWPQAFKEGDDLFPKDSEDKFIPSAVDYV 463
W P +E A++ SLK L LEY+DLYL H P AF DD+ K I S+V+
Sbjct: 53 WTNELAPGRLEGALRDSLKKLHLEYVDLYLAHMPTAF--SDDMSQK------IESSVE-- 102
Query: 464 DTWGALQALVEKGLTRSIGLFNFN 535
D W A+ + GL +++G+ N+N
Sbjct: 103 DIWRQFDAVYKAGLAKAVGVSNWN 126
>Z46794-1|CAA86782.1| 367|Caenorhabditis elegans Hypothetical
protein R06F6.1 protein.
Length = 367
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 417 GNRSSPSLKAWGQCIR*RSKYSKPRFFNEVLIASSTRS 304
G RSSP KAWG I+ +K+ F E S RS
Sbjct: 9 GTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRS 46
>Y10114-1|CAA71200.1| 367|Caenorhabditis elegans histone RNA
hairpin-binding protein protein.
Length = 367
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 417 GNRSSPSLKAWGQCIR*RSKYSKPRFFNEVLIASSTRS 304
G RSSP KAWG I+ +K+ F E S RS
Sbjct: 9 GTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRS 46
>AB060649-1|BAB83255.1| 367|Caenorhabditis elegans histone
stem-loop binding proteinCDL-1 protein.
Length = 367
Score = 29.5 bits (63), Expect = 1.6
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = -3
Query: 417 GNRSSPSLKAWGQCIR*RSKYSKPRFFNEVLIASSTRS 304
G RSSP KAWG I+ +K+ F E S RS
Sbjct: 9 GTRSSPRKKAWGSPIKATAKFQSDIFSVEDFADLSNRS 46
>Z81107-8|CAB03231.3| 282|Caenorhabditis elegans Hypothetical
protein R07H5.9 protein.
Length = 282
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 117 SRER*LKQSKTRSTSATGTWTAPTSTSMRRRWGTP*EPSLKKEQSKERISS 269
SR + + S++RS+S T + +APTST+ T + S KK K R SS
Sbjct: 132 SRSQQCEVSESRSSSVTASSSAPTSTTCYDSEPTKSDTS-KKSSKKSRKSS 181
>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
receptor protein 2 protein.
Length = 1338
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 165 TGTWTAPTSTSMRRRWGTP*EPSLKKEQSKERISS 269
T W P +T+ RW E ++K Q E ISS
Sbjct: 523 TAKWETPDTTNCTHRWVAEMETAIKDNQPVEDISS 557
>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
protein LAT-2 protein.
Length = 1338
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 165 TGTWTAPTSTSMRRRWGTP*EPSLKKEQSKERISS 269
T W P +T+ RW E ++K Q E ISS
Sbjct: 523 TAKWETPDTTNCTHRWVAEMETAIKDNQPVEDISS 557
>U39652-1|AAA80403.2| 552|Caenorhabditis elegans Abnormal cell
migration protein 23 protein.
Length = 552
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 56 PVIFNNGRTCPVI--GLGTWKSKPGEVTQAVKDAIDIGYRHV 175
PVI++N I GL T+ +KP + + ++ +++ RH+
Sbjct: 75 PVIYDNKPVMKKISPGLSTFGTKPAQAAEYLRPLMELAERHI 116
>AY572975-1|AAT77228.1| 580|Caenorhabditis elegans KQT-3 potassium
channel protein.
Length = 580
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 30 KQQAWPRQSPSYSTTDAR-VPSSD*ELGSLSRER*LKQSKTRST 158
K+Q + +QS +T + PS+D E+G L +ER L+ + T
Sbjct: 339 KRQLFKKQSSLVNTFRRKGSPSTDVEMGELQQERLLRHERNSDT 382
>AL032648-2|CAA21699.2| 621|Caenorhabditis elegans Hypothetical
protein Y54G9A.3 protein.
Length = 621
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 30 KQQAWPRQSPSYSTTDAR-VPSSD*ELGSLSRER*LKQSKTRST 158
K+Q + +QS +T + PS+D E+G L +ER L+ + T
Sbjct: 380 KRQLFKKQSSLVNTFRRKGSPSTDVEMGELQQERLLRHERNSDT 423
>AB126261-1|BAD02168.1| 552|Caenorhabditis elegans MIG-23 protein.
Length = 552
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 56 PVIFNNGRTCPVI--GLGTWKSKPGEVTQAVKDAIDIGYRHV 175
PVI++N I GL T+ +KP + + ++ +++ RH+
Sbjct: 75 PVIYDNKPVMKKISPGLSTFGTKPAQAAEYLRPLMELAERHI 116
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,902,986
Number of Sequences: 27780
Number of extensions: 224731
Number of successful extensions: 668
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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