Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2249
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr... 59 4e-10
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 40 4e-04
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 38 9e-04
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 34 0.015
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 32 0.077
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 30 0.24
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 30 0.31
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 30 0.31
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 0.55
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 29 0.72
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 1.7
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 27 2.9
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 3.8
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 26 3.8
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 26 3.8
SPBC119.04 |mei3||meiosis inducing protein Mei3 |Schizosaccharom... 26 5.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 6.7
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 25 8.9
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 8.9
>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 872
Score = 59.3 bits (137), Expect = 4e-10
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Frame = +2
Query: 41 IFGNIEEIHRFHERVFLRELDKYETMPED---VGHCFVTWAREFDMYVSYCRNKPDSNAA 211
IF N+ EI F R FL L+ ++P + +G F+ F +Y +C N P++
Sbjct: 271 IFTNLNEILDFQRR-FLVGLEMNLSLPVEEQRLGALFIALEEGFSVYQVFCTNFPNAQQL 329
Query: 212 VVQHAGDYFERVQRKKKLEHPLAAYLIKPVQRITKYQLLLKDLQACCAEG---QGEIKDG 382
++ + +V + + L A LIKP+QRI KY LLL L G + E+K G
Sbjct: 330 IIDNQNQLL-KVANLLEPSYELPALLIKPIQRICKYPLLLNQLLKGTPSGYQYEEELKQG 388
Query: 383 LEVMLSVPKKANDAMHL 433
+ ++ V + N+ +
Sbjct: 389 MACVVRVANQVNETRRI 405
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 39.5 bits (88), Expect = 4e-04
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Frame = +2
Query: 41 IFGNIEEIHRFHERVF--LRELDKYETMPEDVGHCFVTWAREFDMYVSYCRNKP------ 196
+F NI +IH + R+ L + + +G F+ + +F+ ++ Y N+
Sbjct: 495 VFHNIMQIHAVNSRLSNALNRTQTLQPVVNTIGDLFLDYVPKFEPFIKYGANQAIAKFEF 554
Query: 197 DSNAAVVQHAGDYF---ERVQRKKKLEHPLAAYLIKPVQRITKYQLLL 331
+ + ++ +Y ER++ +KLE L YL KP R+ +Y LLL
Sbjct: 555 EREKSTNRNFANYVHEVERLRESRKLE--LNGYLTKPTTRLARYPLLL 600
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 38.3 bits (85), Expect = 9e-04
Identities = 36/141 (25%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Frame = +2
Query: 2 ASVPLPLQGKEDLI---FGNIEEIHRFHERVF--LRELDKYETMPEDVGHCFVTWAREFD 166
AS +P + KE I F N E+ + ++ L + Y+ + +++ F+ +F+
Sbjct: 653 ASSCIPERKKEKFIRTVFLNALEVQAVNSKLAEALTKRQNYKPIVDNIADIFLEHVPKFE 712
Query: 167 MYVSY----------CRNKPDSNAAVVQHAGDYFERVQRKKKLEHPLAAYLIKPVQRITK 316
++ Y + SN A + D ER++ +KLE L YL KP R+ +
Sbjct: 713 PFIRYGAGQLYGKYEFEKEKSSNPAFAKFVSDV-ERLKESRKLE--LNGYLTKPTTRLAR 769
Query: 317 YQLLLKDLQACCAEGQGEIKD 379
Y LLL+ + EG + +D
Sbjct: 770 YPLLLEAVLKYTDEGNPDKQD 790
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 34.3 bits (75), Expect = 0.015
Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Frame = +2
Query: 41 IFGNIEEIHRFHERVFLRELDKYETMPEDV----GHCFVTWAREF-DMYVSYCRNKP--D 199
+FGN+E I + H R+FL +L E + V G + W Y++Y + P D
Sbjct: 515 VFGNVESIRQLHSRLFLPQLIMRERLQGPVVSIIGDILLEWIHAAKSSYINYAKQFPLAD 574
Query: 200 SNAAVVQHAGDYFER-------VQRKKKLEHPLAAYLIKPVQRITKYQLLL 331
+ YF R R ++L+ +L +P QR+ +Y L L
Sbjct: 575 ETYKLECQRNTYFARWLAACRSDPRCRRLD--FQHFLQRPTQRLQRYTLEL 623
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 31.9 bits (69), Expect = 0.077
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 9/87 (10%)
Frame = +2
Query: 128 VGHCFVTWAREFD-MYVSYCRNKPDSNAAVVQ-----HAGDYFERVQRKKKLEHP---LA 280
V F++W + +Y YC + + V + +Y + K+E L
Sbjct: 157 VAQLFLSWLPKLSAVYGRYCVIQENIGKKVEKWMKNSSISEYLQECDSMAKIESNSWNLD 216
Query: 281 AYLIKPVQRITKYQLLLKDLQACCAEG 361
++L+KPVQR KY LLL L + G
Sbjct: 217 SFLVKPVQRFLKYPLLLNQLYRSASLG 243
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 30.3 bits (65), Expect = 0.24
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = -2
Query: 510 PTRE-RSPWRTTSPRLSVGTSHPSSRERCIASLAFFGTES----ITSKPS 376
PTR R+P R+ S R SV +S SSR R ++++ + S I+SKPS
Sbjct: 540 PTRRSRTPIRSLSGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPS 589
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 29.9 bits (64), Expect = 0.31
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 203 NAAVVQHAGDYFER-VQRKKKLEHPLAAYLIKPVQRITKYQLL 328
+ ++V HA F+R + RK K E+ +++ + +TK+QL+
Sbjct: 513 STSLVDHARHSFKRMIHRKAKHEYDTRLLIVRYISELTKFQLM 555
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 29.9 bits (64), Expect = 0.31
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 239 ERVQRKKKLEHPLAAYLIKPVQRITKYQLLLKDLQACCAEGQGEIKD 379
+++ +K L + +IKP+QR+ KY LLL+ + E E D
Sbjct: 443 DKIVQKYTNAWDLGSLIIKPLQRLLKYPLLLQKIIDVTPESSSERPD 489
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 29.1 bits (62), Expect = 0.55
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Frame = +3
Query: 69 VSTSAFSSENWTNTRRCRKTSATAS*LGRA-SSICTCRTVATSQTAMRLSSNTPAITLRG 245
+S +A SS + T T TAS SSI + + +S T +SSN P+ T
Sbjct: 721 LSLTAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVSNISSNLPSATASS 780
Query: 246 CNERKNSS 269
++ NSS
Sbjct: 781 QSQLTNSS 788
Score = 28.3 bits (60), Expect = 0.95
Identities = 22/82 (26%), Positives = 39/82 (47%)
Frame = +3
Query: 72 STSAFSSENWTNTRRCRKTSATAS*LGRASSICTCRTVATSQTAMRLSSNTPAITLRGCN 251
S+S FSS T + +S ++ SSI + T + S T++ +SS++ + T +
Sbjct: 549 SSSDFSSSITTISSGISSSSIPST-FSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSAS 607
Query: 252 ERKNSSIHSPLI*SNRFKGLPS 317
SSI S + S+ P+
Sbjct: 608 TSSPSSISSSISSSSTILSSPT 629
Score = 26.6 bits (56), Expect = 2.9
Identities = 25/74 (33%), Positives = 33/74 (44%)
Frame = +3
Query: 66 IVSTSAFSSENWTNTRRCRKTSATAS*LGRASSICTCRTVATSQTAMRLSSNTPAITLRG 245
I S+SA S + SATAS S + T+ATS SS T I+
Sbjct: 754 ITSSSAIVSSTTVSNISSNLPSATAS---SQSQLTNSSTLATSLYLSSSSSRT--ISTSS 808
Query: 246 CNERKNSSIHSPLI 287
NE N+S H+P +
Sbjct: 809 TNEY-NTSFHAPTV 821
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/57 (22%), Positives = 30/57 (52%)
Frame = +3
Query: 66 IVSTSAFSSENWTNTRRCRKTSATAS*LGRASSICTCRTVATSQTAMRLSSNTPAIT 236
+ TS+ S+ +W+++ ++A ++ SSI T +S +++ +S T + T
Sbjct: 945 VTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASATDSST 1001
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 28.7 bits (61), Expect = 0.72
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +2
Query: 230 DYFERVQRKKKLEHPLAAYLIKPVQRITKYQLLLKDLQACCAEGQ 364
++ ++V+ + L+ +++PVQRI +Y L L + EG+
Sbjct: 362 EFHDQVKLNANMNVGLSQLIMEPVQRIPRYSLFLDQIILLTQEGE 406
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 158 EFDMYVSYCRNKPDSNAAVVQHAGDYFERVQRKKKLEHPLAAYLI 292
+++ VS C P+ + + GD F V + +K EH L YL+
Sbjct: 1285 DYEPDVSLC---PELLSLAIDFPGDPFVMVSKMEKYEHALRVYLL 1326
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -1
Query: 139 AVADVFRHRLVFVQFSEENALVETM 65
A++ V R +L +Q+S+EN VET+
Sbjct: 397 AISSVLRTKLYQLQYSDENVKVETV 421
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -2
Query: 165 SNSRAQVTKQWPTSSGIVSYLSNSLRKTRSWKR*ISSMLPNIKSSFP*SGSGTE 4
S +R V T +G Y NS T + SSM+ I+S FP G E
Sbjct: 12 SRARRSVLSYGTTETGSDRYTENSNIATENGVDTASSMIDGIQSGFPQPRHGFE 65
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = -1
Query: 553 KTLLSRPFLMI*RRSHT*KESLEDDLAEAVSR--DVTPLEQREVHRIIGLLWH*EHNFQA 380
K ++ RPFL+ + K S DD+ E + R D E ++ + I L Q
Sbjct: 442 KLMIFRPFLIFLAYVNISKTSAPDDIIEGLKRGSDQCVQEAIDISKFIVQLNRKVRMLQP 501
Query: 379 VLYLSLSFSTACLKIL 332
+ ++ +AC +L
Sbjct: 502 IFFICTYLESACTVLL 517
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 446 GCDVPTDSLGEVVLQGLLSRVGPSSDHQKG 535
GC VP + ++ +L+RVG S KG
Sbjct: 744 GCPVPCEVADLDIIDAILARVGASDSQLKG 773
>SPBC119.04 |mei3||meiosis inducing protein Mei3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -2
Query: 561 SKRRLSSRVPF**SDEGPTRERSPWRTTSPRLSVGTSHPSSRERCI 424
S+ +SR P + P R + R+TSPR S G+S ++ + +
Sbjct: 3 SQNTSNSRHPASSASALPNRTNTARRSTSPRTSTGSSSTNTNTKTV 48
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 599 ESFTSFAKKPDASRKEDSPLASLFDDLTKV 510
E + P++S DS A DDLTKV
Sbjct: 176 EDYVDGQSDPESSNASDSDFADSPDDLTKV 205
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 8.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 7/42 (16%)
Frame = +2
Query: 323 LLLKDLQACCAEGQGEIKD-------GLEVMLSVPKKANDAM 427
L L +++ACCA G IKD G E+++ P + D +
Sbjct: 515 LKLLNIRACCAYGGAPIKDQIADLKRGAEIVVCTPGRMIDVL 556
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 379 VLYLSLSFSTACLKILQQQLILGNPLNRFDQI 284
V++LSL S IL + +L NP+ F Q+
Sbjct: 332 VIFLSLITSLTAYAILGESELLFNPMELFPQV 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,998
Number of Sequences: 5004
Number of extensions: 57718
Number of successful extensions: 202
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -