Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2249
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0457 + 10503801-10507358 32 0.43
12_01_0961 + 9566730-9566998,9567096-9567187,9567294-9567427,956... 29 3.0
01_03_0082 - 12280109-12281068 29 3.0
12_01_0375 + 2930807-2930838,2930936-2930999,2931127-2931333,293... 29 4.0
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 28 5.2
03_06_0104 + 31671752-31672207 28 5.2
03_04_0151 - 17729023-17729372,17729441-17730623,17730723-177309... 28 5.2
12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,573... 28 6.9
03_05_1132 - 30609569-30609721,30610113-30610204,30610302-306104... 28 6.9
01_05_0421 + 21990034-21990392,21991691-21992681 28 6.9
10_08_0625 + 19362303-19363853 27 9.2
09_04_0193 - 15492102-15492746,15492833-15492946,15493042-154933... 27 9.2
01_01_0610 + 4533141-4533310,4534889-4535075,4535232-4535323,453... 27 9.2
>02_02_0457 + 10503801-10507358
Length = 1185
Score = 31.9 bits (69), Expect = 0.43
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = +2
Query: 74 HERVFLRELDKYETMPEDVGHCFVTWAREFD--MYVSYCRNK 193
HE L++ D +E +P V H F+ + FD + +S C++K
Sbjct: 555 HECFILKDKDDFEKVPSSVRHLFILPSTNFDCNLLLSLCKHK 596
>12_01_0961 +
9566730-9566998,9567096-9567187,9567294-9567427,
9567542-9567591,9569026-9569100,9569179-9569734
Length = 391
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = -2
Query: 282 AASGCSSFFFRCTLSK*SPACWTTAALLSGLLRQYDTYISNSRAQVTKQWPTSS-GIVSY 106
AA SSF S + A W +LL L DT + SR + +SS G
Sbjct: 25 AAKDASSFLSPRFRSAAAQAGWDEESLLHAALVVEDTPVRESRRRRRASTTSSSAGGGGS 84
Query: 105 LSNSLRKTRSWKR*ISSMLP 46
++ RK RSW++ S+ P
Sbjct: 85 AGSNTRKRRSWRQPPGSIPP 104
>01_03_0082 - 12280109-12281068
Length = 319
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 112 DDAGRRRPLLRDLGARV 162
DD GRRRPL+ D+GA V
Sbjct: 272 DDDGRRRPLVLDMGAMV 288
>12_01_0375 +
2930807-2930838,2930936-2930999,2931127-2931333,
2932385-2932458,2932831-2932858,2933268-2933456
Length = 197
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = -3
Query: 602 WESFTSFAKKPDASRKEDSPLASLFDDLTKVPHV-KGVLGGRPRRGCQSGRH 450
W F + + P R L + V V K + RPRRG Q+G++
Sbjct: 144 WSPFATKRRPPSPPRPPQESLFESNPEAAAVAEVLKATINPRPRRGAQNGKN 195
>11_02_0051 +
7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 416 NDAMHLSLLEGCDVPTDSLGEVVLQGLLSRVGPS 517
ND +HL +LEG P + L ++++ G S V PS
Sbjct: 762 NDNLHLEVLEGLKPPRE-LNDLIVTGYRSPVYPS 794
>03_06_0104 + 31671752-31672207
Length = 151
Score = 28.3 bits (60), Expect = 5.2
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 76 RARFPQRIGQIRDDAGRRRPLLRDLGARV----RYVRVVLSQQARQQCGCRPTRRRLL 237
RAR QR+ ++R ++ R R R+L AR+ R+ Q AR + RRLL
Sbjct: 71 RARKQQRLEELRGESARLRAENRELAARLHAVARHGLAARCQNARLRAEAAALARRLL 128
>03_04_0151 -
17729023-17729372,17729441-17730623,17730723-17730953,
17730975-17731036,17732085-17732157,17737044-17737834,
17737932-17738004
Length = 920
Score = 28.3 bits (60), Expect = 5.2
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -2
Query: 582 RQKARCKSKRRLSSRVPF**SDEGPTRERSPWRTTSP---RLSVGTSHPSSRERCIASLA 412
+Q+A S S++V S P RS T+S R S TSHPSS RC+ L
Sbjct: 752 KQEATTASTEAHSAKVVLKKSLSSPAISRSLTTTSSSSPKRRSNVTSHPSSVLRCVFFLT 811
Query: 411 FFGTESITSKPSF 373
+ S +K +F
Sbjct: 812 TSTSISFATKITF 824
>12_01_0672 + 5731288-5731356,5732032-5732117,5732634-5732724,
5732886-5732935,5733339-5733408,5733508-5733617,
5733943-5734463,5734856-5734949,5735095-5735225,
5735241-5736274,5736383-5736457,5736615-5737104,
5737375-5738009,5738166-5738378
Length = 1222
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = +2
Query: 359 GQGEIKDGLEV--MLSVPKKANDAMHLSLLEGCDVPTDSLGEVVLQGLLSRVGPSSDHQK 532
G +++ L++ +L P + + + + GC V TDS LQ + K
Sbjct: 911 GFSNVEEALKMAGLLDSPPNSPERKNTIIEGGCIVDTDSEPSKKLQSTSDSIVRDISSHK 970
Query: 533 GTREESLLFDLH 568
+ S+L DLH
Sbjct: 971 DADDSSMLIDLH 982
>03_05_1132 -
30609569-30609721,30610113-30610204,30610302-30610428,
30610534-30610705,30610958-30611007,30611093-30611243,
30611353-30611479,30611885-30612071,30612245-30612398,
30612485-30612567,30613439-30613573
Length = 476
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 194 ACCDSTTRTYRTRAPKSRSSGRRLPASSRICP 99
AC + TR ++ + + +G+ LP S CP
Sbjct: 155 ACSEFVTRYHQNQLSSGKEAGKNLPMLSSACP 186
>01_05_0421 + 21990034-21990392,21991691-21992681
Length = 449
Score = 27.9 bits (59), Expect = 6.9
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = -2
Query: 501 ERSPWRTTSPRLSVGTSHPSSRERCIASLAFFGTESITSKPSFISPCPSAQHA 343
E +PW TT P HP + C A+ A S TS P P+A A
Sbjct: 223 EMAPWPTTMP---YDHHHPLLQPLCNANAAATAQSSATSAPPTTPQLPAAAAA 272
>10_08_0625 + 19362303-19363853
Length = 516
Score = 27.5 bits (58), Expect = 9.2
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 461 TDSLGEVVLQGLLSRVGPSSDHQKGTREESLLFDLHLA 574
TD E++LQ L++R GP + GTR + D LA
Sbjct: 54 TDVEPELLLQRLIARYGPIVSLRMGTRVSVFVADRRLA 91
>09_04_0193 -
15492102-15492746,15492833-15492946,15493042-15493332,
15493412-15493720,15493815-15494552
Length = 698
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 172 VHIELARPSHEAVADVFRHRLVFVQFSEENALVETMNLFYVTKYQ 38
+ E+++ SH+ V V+RHR++ + N L M+ YV Y+
Sbjct: 282 IKAEVSKWSHQGVNIVYRHRVLRTGYKAGN-LKSAMSCDYVKDYE 325
>01_01_0610 +
4533141-4533310,4534889-4535075,4535232-4535323,
4536203-4536308,4536441-4536649,4537049-4537091,
4537413-4537645,4537762-4538233
Length = 503
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 259 FLSLHPLKVIAGVLDDSRIAVWLVAT 182
FL L P KVI G D ++ VW T
Sbjct: 376 FLHLDPYKVITGAPSDGQVHVWETQT 401
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,744,186
Number of Sequences: 37544
Number of extensions: 404652
Number of successful extensions: 1412
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1411
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -