Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2249
(625 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0) 129 2e-30
SB_46551| Best HMM Match : PH (HMM E-Value=2e-10) 78 4e-30
SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 1e-12
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12) 66 3e-11
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 62 3e-10
SB_16131| Best HMM Match : RhoGEF (HMM E-Value=2e-05) 62 5e-10
SB_37167| Best HMM Match : RhoGEF (HMM E-Value=1.5e-10) 46 3e-05
SB_57077| Best HMM Match : RhoGEF (HMM E-Value=2.1e-07) 44 1e-04
SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11) 37 0.015
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.14
SB_54380| Best HMM Match : LEM (HMM E-Value=0.5) 31 0.76
SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011) 30 1.3
SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37) 29 2.3
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11) 29 2.3
SB_5156| Best HMM Match : Spectrin (HMM E-Value=0.16) 29 2.3
SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) 29 3.1
SB_16621| Best HMM Match : TSP_1 (HMM E-Value=1.9e-11) 29 4.1
SB_13275| Best HMM Match : Phycoerythr_ab (HMM E-Value=0.23) 29 4.1
SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94) 28 5.4
SB_23314| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_39849| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32) 27 9.4
SB_58280| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_46550| Best HMM Match : Asn_synthase (HMM E-Value=0)
Length = 1663
Score = 129 bits (312), Expect = 2e-30
Identities = 72/168 (42%), Positives = 99/168 (58%), Gaps = 4/168 (2%)
Frame = +2
Query: 8 VPLPLQGKEDLIFGNIEEIHRFHERVFLRELDKYETMPEDVGHCFVTWAREFDMYVSYCR 187
+P L+GKE ++FGNI++I+ +H+ VF REL+K E PE + F+ R MYV YC+
Sbjct: 324 LPEELKGKERMVFGNIKQIYEWHKTVFCRELEKCEDAPEKLASVFLKAERRLQMYVIYCQ 383
Query: 188 NKPDSNAAVVQHAGDYFERVQRKKKLEHPLAAYLIKPVQRITKYQLLLKDLQACCAEGQG 367
NKP S A V + YF ++ + + YLIKPVQR+ KYQLLLKD E G
Sbjct: 384 NKPKSTALVHEFKETYFTDMKDRLGYRLSIEDYLIKPVQRVMKYQLLLKDF-VKYTERAG 442
Query: 368 ----EIKDGLEVMLSVPKKANDAMHLSLLEGCDVPTDSLGEVVLQGLL 499
E+K L +M VPKKAND +++ +LEG + G +VLQ L
Sbjct: 443 LDIIELKRALHLMHVVPKKANDFLNVGMLEGYTGKITAQGNLVLQDTL 490
>SB_46551| Best HMM Match : PH (HMM E-Value=2e-10)
Length = 310
Score = 77.8 bits (183), Expect(2) = 4e-30
Identities = 45/101 (44%), Positives = 60/101 (59%)
Frame = +2
Query: 275 LAAYLIKPVQRITKYQLLLKDLQACCAEGQGEIKDGLEVMLSVPKKANDAMHLSLLEGCD 454
++AYLIKPVQRITKYQLLLK GL+VMLSVP++ANDAM++++L G +
Sbjct: 94 ISAYLIKPVQRITKYQLLLKA--------------GLDVMLSVPRRANDAMYVNMLHGLE 139
Query: 455 VPTDSLGEVVLQGLLSRVGPSSDHQKGTREESLLFDLHLAF 577
D LG ++LQ + P +KG LF+ L F
Sbjct: 140 ENLDHLGRIILQDAFTVFDPKLLRRKGKDRHVFLFEQALVF 180
Score = 71.7 bits (168), Expect(2) = 4e-30
Identities = 31/58 (53%), Positives = 41/58 (70%)
Frame = +2
Query: 8 VPLPLQGKEDLIFGNIEEIHRFHERVFLRELDKYETMPEDVGHCFVTWAREFDMYVSY 181
VP L GKE +IFGNI++I++FH FL+E++KYET PEDVG F+ W D+ SY
Sbjct: 35 VPAGLVGKESIIFGNIQDIYKFHSNTFLQEMEKYETHPEDVGEAFIEW----DLQASY 88
>SB_31699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6119
Score = 70.1 bits (164), Expect = 1e-12
Identities = 39/145 (26%), Positives = 76/145 (52%), Gaps = 4/145 (2%)
Frame = +2
Query: 8 VPLPLQGKEDLIFGNIEEIHRFHERVFLRELDKYETMPEDVGHCFVTWAREFDMYVSYCR 187
+P L + F NI +I FHERVFL +L+ + +DV F + + YV +
Sbjct: 5431 IPDSLANQRKTFFANIRDICEFHERVFLPDLEAAKA--DDVPTIFSKHKTKLETYVKFLE 5488
Query: 188 NKPDSNAAV-VQHAGDYFERVQRKKKLEHPLAAYLIKPVQRITKYQLLLKDLQACCAEGQ 364
+P N + + +++E Q + H + YL+KP QR+ +Y+ +L++L +
Sbjct: 5489 TRPIVNELLGDEEVREFWEEFQEDTQDRHFVTDYLLKPSQRLHEYRRVLRELLKYSVKAS 5548
Query: 365 GE---IKDGLEVMLSVPKKANDAMH 430
+ + L++++S+P+KA +++H
Sbjct: 5549 VQTTSYESALQIVVSIPRKAEESIH 5573
>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
Length = 979
Score = 65.7 bits (153), Expect = 3e-11
Identities = 31/67 (46%), Positives = 39/67 (58%)
Frame = +2
Query: 8 VPLPLQGKEDLIFGNIEEIHRFHERVFLRELDKYETMPEDVGHCFVTWAREFDMYVSYCR 187
+P+ L + + IFGNIEEI FH FL EL+K P+ VG F EF+ Y YC+
Sbjct: 449 IPIELFDQRETIFGNIEEILEFHRCDFLEELNKCSETPKSVGKVFTERRGEFEKYALYCK 508
Query: 188 NKPDSNA 208
NKP S A
Sbjct: 509 NKPASEA 515
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 62.5 bits (145), Expect = 3e-10
Identities = 32/118 (27%), Positives = 59/118 (50%)
Frame = +2
Query: 5 SVPLPLQGKEDLIFGNIEEIHRFHERVFLRELDKYETMPEDVGHCFVTWAREFDMYVSYC 184
+ P + ++ IF NIE+++ FH+ V L EL + + P +G FV+ YV +C
Sbjct: 1803 NAPRDIAENKETIFINIEDLYFFHKVVMLEELQQLKDTPSLIGKPFVSREPTLYKYVDFC 1862
Query: 185 RNKPDSNAAVVQHAGDYFERVQRKKKLEHPLAAYLIKPVQRITKYQLLLKDLQACCAE 358
K DS + + +FE Q K+ PL + +P++R+ +Y+ + ++ E
Sbjct: 1863 DAKEDSELVLASSSSQFFEFCQ-KRHNARPLTTLMQRPLERLFEYKQFMTEMLTAAQE 1919
>SB_16131| Best HMM Match : RhoGEF (HMM E-Value=2e-05)
Length = 520
Score = 61.7 bits (143), Expect = 5e-10
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Frame = +2
Query: 2 ASVPLPLQGKEDLIFGNIEEIHRFHERVFLRELDKYETMPEDVGHCFVTWARE--FDMYV 175
AS P L+G + IF NI++IH +H F L E MP +G F T+A ++Y
Sbjct: 324 ASAPSELKGNQKFIFSNIQDIHDWHANKFYTFLKDCEDMPSQLGDVF-TYAESKLEELYT 382
Query: 176 SYCRNKPDSNAAVVQHAGDYFERV 247
YCRNKP S++ V+ + +F+ +
Sbjct: 383 VYCRNKPKSDSLVMTYKDTFFQLI 406
>SB_37167| Best HMM Match : RhoGEF (HMM E-Value=1.5e-10)
Length = 180
Score = 45.6 bits (103), Expect = 3e-05
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Frame = +2
Query: 122 EDVGHCFVTWAREF-DMYVSYCRNKPDSNAAVVQHAGDYFERVQRKKKLEH--------P 274
+++G CF A E +Y +YC+N D+ + ++ + +K L+
Sbjct: 25 QELGKCFAEHAEEIKSVYSTYCKNHDDAIGLLEKYEDCLEAQEAFRKCLDAVRDTTKCWD 84
Query: 275 LAAYLIKPVQRITKYQLLLKDLQACCAEGQGEIKDGLEVMLS 400
L+++LIKPVQR+ KY LLL +L C + + KD L LS
Sbjct: 85 LSSFLIKPVQRVLKYPLLLSELLKCTPQIHKD-KDNLVRALS 125
>SB_57077| Best HMM Match : RhoGEF (HMM E-Value=2.1e-07)
Length = 658
Score = 44.0 bits (99), Expect = 1e-04
Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Frame = +2
Query: 128 VGHCFVTWAREFDMYVSYCRNKPDSNAAVVQHAG--------DYFERVQRKKKLEHPLAA 283
+G F+ + F +Y ++C S++ VV+ G ++ + K + L +
Sbjct: 87 IGETFLQYTEHFKLYSAFC----SSHSRVVELLGPGKNEALRNFLDARNPKNQHSGTLES 142
Query: 284 YLIKPVQRITKYQLLLKDLQACCAEGQGEIKDGLEVMLSVPKKA 415
Y IKP+QRI +Y LLL+ + E E K LE ++++ K A
Sbjct: 143 YFIKPIQRILRYPLLLRTILKLLDETSEEYKVLLEAVVAIEKVA 186
>SB_40415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1512
Score = 39.9 bits (89), Expect = 0.002
Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 12/115 (10%)
Frame = +2
Query: 119 PEDVGHCFVTWAREFDMYVSYCRNKPDS----NAAVVQHAG--DYFERVQRKKKLEH--P 274
P D+ F + + F+ Y++YC + ++++ Y + + +
Sbjct: 396 PMDMNEAFPMFDKRFEPYITYCMEESRCLKYFKEKIIENEDFRTYITWCEEHRLCTNRLK 455
Query: 275 LAAYLIKPVQRITKYQLLLKDLQACCAEGQGEIKDGLEVML----SVPKKANDAM 427
L YL+KP+QR+TKY LLLK + + E+K+G+ M+ S+ K N AM
Sbjct: 456 LTDYLVKPMQRLTKYPLLLKAIHKKTQD--EEMKEGIWKMILTVESLLSKVNGAM 508
>SB_55307| Best HMM Match : HEAT (HMM E-Value=2.4e-11)
Length = 1552
Score = 36.7 bits (81), Expect = 0.015
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +2
Query: 236 FERVQRKKKLEHPLAAYLIKPVQRITKYQLLLKDLQACC---AEGQGEIKDGLEVMLSVP 406
++ + +K PL A+L+KP QR+ Y+ LL+ L C +E +I+ LE ++
Sbjct: 1483 YKEFETQKICYLPLNAFLLKPSQRLLHYRFLLERLLKYCVRDSEDSQDIQGALEELVGAV 1542
Query: 407 KKANDAM 427
K ++M
Sbjct: 1543 KSTEESM 1549
>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1511
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Frame = +2
Query: 167 MYVSYCRNKPDSNAAV------VQHAGDYFERVQRKKKLEH-PLAAYLIKPVQRITKYQL 325
MY +Y N +N V + +QR + E+ L ++++P+QR+ +Y+L
Sbjct: 995 MYSAYVGNFDKANETVSVWLKKLPKFASVINEIQRSPESENLTLQHHMLEPIQRVPRYKL 1054
Query: 326 LLKDLQACCAEGQGEI---KDGLEVMLSVPKKANDAM 427
LL D E ++ KD L ++ +++N+ M
Sbjct: 1055 LLTDYINKLPEDSPDVNATKDALAIVSKAAQQSNEIM 1091
>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1200
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/78 (30%), Positives = 38/78 (48%)
Frame = +2
Query: 170 YVSYCRNKPDSNAAVVQHAGDYFERVQRKKKLEHPLAAYLIKPVQRITKYQLLLKDLQAC 349
Y+ C+ D V + E R K+L+ L L+ P+Q +TKY LLLK+++
Sbjct: 834 YLDQCKKSEDFQEFV-----KWCEADPRCKRLQ--LTDLLVAPLQHLTKYPLLLKNIRKR 886
Query: 350 CAEGQGEIKDGLEVMLSV 403
+EG + V+ SV
Sbjct: 887 TSEGDDQHSSLSSVIKSV 904
>SB_54380| Best HMM Match : LEM (HMM E-Value=0.5)
Length = 731
Score = 31.1 bits (67), Expect = 0.76
Identities = 32/161 (19%), Positives = 65/161 (40%), Gaps = 14/161 (8%)
Frame = +2
Query: 2 ASVPLPLQGKEDLIFGNIEEIHRFHERVFLRELDKYETMPEDVGHCF-------VTWARE 160
A V L + L NI EIH+ ++ ++ + E+ F +T +
Sbjct: 69 AKVNLFFEPSSPLAGRNIVEIHQHSRKLSRSSVEDMKNGNEEECFSFEEYIPSEITSTSD 128
Query: 161 FDMYVSYCRNKPDSNAAVVQHAGDYFERVQRKKKLEHPLAAYLIKPVQRITKYQLLL--- 331
+ + + N+P SN +++ + + RK+KLE +K ++ LL
Sbjct: 129 VEQDILFAANEPSSNGGLIERGTEVESKHLRKRKLEPDSTTDGVKKSRKNFNIDTLLMKK 188
Query: 332 -KDLQACCAEGQGEIKDGLE---VMLSVPKKANDAMHLSLL 442
++L+ C GE+ + + + +P+ H+ LL
Sbjct: 189 EQELEIECDTTTGELPASMVDACIQVDLPRPTPQFKHVRLL 229
>SB_26138| Best HMM Match : RhoGEF (HMM E-Value=0.0011)
Length = 1199
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 275 LAAYLIKPVQRITKYQLLLKDLQACCAEGQGE 370
L ++L+ PVQRI KY LLL ++ G +
Sbjct: 1018 LTSFLLAPVQRIMKYPLLLSRIRKSTPRGNAD 1049
>SB_15679| Best HMM Match : p450 (HMM E-Value=1.9e-37)
Length = 492
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 356 EGQGEIKDGLEVMLSVPKKANDAMHLSLLEGCDVPTDSL 472
E Q E+K+ ++ M KK D +++ +G DVP D L
Sbjct: 248 EYQNEVKEAVKFMRDYGKKVIDGRRVAMDDGEDVPCDVL 286
>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +2
Query: 38 LIFGNIEEIHRFHERVFLRELDKY 109
L+F NIE+I+ FH+++ L+ D Y
Sbjct: 969 LLFSNIEQIYEFHQKLLLQLEDCY 992
>SB_10947| Best HMM Match : PH (HMM E-Value=1.3e-11)
Length = 591
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 227 RRVGRQPHCCLACCDSTTRTYRTRAPKSRS 138
R+ GR+ C L C D+ RTY +P RS
Sbjct: 542 RKTGRRKKC-LFCLDTPNRTYTIESPNERS 570
>SB_5156| Best HMM Match : Spectrin (HMM E-Value=0.16)
Length = 415
Score = 29.5 bits (63), Expect = 2.3
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +2
Query: 20 LQGKEDLIFGNIEEIHRFHE 79
L+GK++++FGNIE + FH+
Sbjct: 395 LKGKKNILFGNIERLSDFHK 414
>SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 29.1 bits (62), Expect = 3.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 227 RRVGRQPHCCLACCDSTTRTYRTRAPKSRSSGRRLPAS 114
RR R+ HC C D + T+ T K+ G R+P++
Sbjct: 643 RRNPRREHCIYLCSDFLSLTHITPEGKTSRGGARVPSA 680
>SB_20454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 275 LAAYLIKPVQRITKYQLLLKDL 340
L AYL+ P+QR+ +Y LL+ L
Sbjct: 248 LQAYLLNPIQRLPRYVLLISQL 269
>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
Length = 865
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/63 (36%), Positives = 29/63 (46%)
Frame = -2
Query: 582 RQKARCKSKRRLSSRVPF**SDEGPTRERSPWRTTSPRLSVGTSHPSSRERCIASLAFFG 403
R AR + RR SR D R+RSP R SPR + P SR R +S + G
Sbjct: 420 RNMARDRDDRRPPSRSR---RDSSLRRQRSPLRNRSPRWRGRSPSPRSRRRRRSSDRYKG 476
Query: 402 TES 394
+ S
Sbjct: 477 SFS 479
>SB_16621| Best HMM Match : TSP_1 (HMM E-Value=1.9e-11)
Length = 84
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 449 CDVPTDSLGEVVLQGLLSRVGPSSDHQKGTREESLLFDL 565
CD PT G + QG ++ V S T+++SLL+D+
Sbjct: 31 CDNPTPQYGGKLCQGSIAEVEECSVKTSCTKKKSLLWDV 69
>SB_13275| Best HMM Match : Phycoerythr_ab (HMM E-Value=0.23)
Length = 250
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 239 ERVQRKKKLEHPLAAYLIKPVQRITKY-QLLLKDLQACCAEGQGEIKDGLEVMLSVPKKA 415
E ++ + L++P A+ L V R + DL C + +G GL+V + +++
Sbjct: 40 EMLKDGRDLQNPSASCLSPDVGRQEDLPEDKSSDLDPCAGDDEGNYLLGLDVFTNTVQES 99
Query: 416 NDAMHLSLLEGCD 454
+ L+ EGCD
Sbjct: 100 KVSEGLTYKEGCD 112
>SB_52278| Best HMM Match : Ery_res_leader1 (HMM E-Value=0.94)
Length = 592
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 162 SICTCRTVATSQTAMRLSSNTPAITLRGCNERKNS 266
+IC RT SQ +R N P + +R C R+ S
Sbjct: 490 AICRYRTRQVSQRGVRERRNHPGVAIRRCRTRQVS 524
>SB_23314| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 569 DASRKEDSPLASLFDDLTKVPHVKGVLGGRPRRGCQSGRHTPRAERG 429
+ SR + + S + + ++ + +LG +GCQ RH +RG
Sbjct: 76 EVSRAKTRFIQSKYSSVLQIERLAQILGSEIGQGCQRKRHQRGVQRG 122
>SB_39849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -3
Query: 269 ARVFSFVAPSQSNRRRVGRQPHCCLACCDSTTRTYRTRAP 150
AR S+V P S RR R+P L C ST + R P
Sbjct: 27 ARRLSWVTPGFSQSRRCKRRPVPSLHACRSTLEDPQYRVP 66
>SB_17098| Best HMM Match : WD40 (HMM E-Value=8.9e-32)
Length = 808
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +3
Query: 495 SFHVWDLRQIIKKGR-ERRVFFSTCIW 572
S +VWDL+ I K G+ ++ S C+W
Sbjct: 278 SLYVWDLKDIKKIGKIWSSLYHSACVW 304
>SB_58280| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 221 HAGDYFERVQRKKKLEHPLAAYLIKPVQRITK 316
H FE+ K EH LA L+KPV+ +K
Sbjct: 198 HTAQSFEKAVVLKAFEHLLALELVKPVEGSSK 229
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,069,946
Number of Sequences: 59808
Number of extensions: 450164
Number of successful extensions: 1551
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1547
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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