Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2248
         (497 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        29   1.6  
SB_45970| Best HMM Match : rve (HMM E-Value=1.7e-11)                   28   4.9  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_40127| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-06)                 27   8.6  

>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -2

Query: 118 LCHNRVVVILKKMYAYKKMETPLHFS 41
           LC+N ++++L   YA++  +TPL+F+
Sbjct: 606 LCYNVLLILLCTYYAFRTRKTPLNFN 631


>SB_45970| Best HMM Match : rve (HMM E-Value=1.7e-11)
          Length = 717

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 195 YYYNFTVIVLVHISTFKSYSNHQYIFFVTIESWLY*KKCMH 73
           YYY F+ IV   +      + +  +F V +++W    K +H
Sbjct: 662 YYYTFSAIVAFFVPLNIIVATYSCVFIVAVQNWRSTIKAIH 702


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 1/89 (1%)
 Frame = -3

Query: 279 SRLY*KKMYAHKKWKLHCIFLIIFGLF*YY-YNFTVIVLVHISTFKSYSNHQYIFFVTIE 103
           S L+      H  +  H I+L    L  +  Y + VI L H+S     +   ++ ++   
Sbjct: 85  SLLFHVSSLCHVNYVYHVIWLFHVSLLCHVIYMYHVIWLFHVSLLCHVNYMYHVIWLFHV 144

Query: 102 SWLY*KKCMHIKKWKLHCTFLIIFGLFYY 16
           SWL     M+   W  H + L      Y+
Sbjct: 145 SWLCHVNYMYHVIWLFHVSLLCHVNWLYH 173


>SB_40127| Best HMM Match : 7tm_1 (HMM E-Value=6.4e-06)
          Length = 266

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 177 VIVLVHISTFKSYSNHQYIFFVTIESWLY*K-KCMHIKKWKLHCTFLIIFGLFYYSY 10
           V+ L + + F+  S+H+   FV   +    + K   I++ K   T  II G+F++SY
Sbjct: 91  VVTLCYFNIFRISSHHKRCLFVLARTVRSNEDKKRWIRENKAAKTTAIIIGMFFFSY 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,631,862
Number of Sequences: 59808
Number of extensions: 220201
Number of successful extensions: 500
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)