Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2248
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine r...    27   5.7  
AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine re...    27   5.7  
U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine rece...    27   7.6  
AL021493-3|CAA16390.2|  243|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine r...    27   7.6  
AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine re...    27   10.0 

>Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical
           protein T09F5.8 protein.
          Length = 336

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = -3

Query: 192 YYNFTVIVLVHISTFKSYSNHQYIFFVTIESWLY*KKCMHIKKWKLHCTFLI 37
           Y   T++++V +ST   + N  YI F     W Y +   +I  + L   + +
Sbjct: 96  YIMVTLLMMVAVSTISIFENRFYILFAEYTWWRYGRIVFYIINYSLALLYFV 147


>AF047657-14|AAK18952.1|  331|Caenorhabditis elegans Serpentine
           receptor, class h protein127 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/64 (21%), Positives = 30/64 (46%)
 Frame = -3

Query: 201 F*YYYNFTVIVLVHISTFKSYSNHQYIFFVTIESWLY*KKCMHIKKWKLHCTFLIIFGLF 22
           F  Y + T++ ++  +  K Y N  ++    ++ W   +K + +  +   CT+ I   LF
Sbjct: 104 FQVYLSVTIVAVLVATMVKVYENRWFLLARNLKKWKKIRKKLCLIHYFASCTYFIPL-LF 162

Query: 21  YYSY 10
           +  Y
Sbjct: 163 FVPY 166


>AF026209-4|AAW88411.1|  317|Caenorhabditis elegans Serpentine
           receptor, class h protein2, isoform b protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 234 LHCIFLIIFGLF*YYYNFTVIVLVHISTFKSYSN 133
           LH I LI+F +F Y   F V+++    TFK Y N
Sbjct: 17  LHYI-LILFSVFVYVAAFWVLIVKCPETFKGYRN 49


>U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 11 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 229 LHFSYYFWPILILLQFHSN 173
           + FS++FW +L   QFH N
Sbjct: 38  IQFSFFFWVMLCAKQFHFN 56


>AL021493-3|CAA16390.2|  243|Caenorhabditis elegans Hypothetical
           protein Y51A2B.3 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = -3

Query: 264 KKMYAHKKWK----LHCIFLIIFGLF*YYYNFTVIVLVHISTFKSYSNHQYI-FFVTI 106
           +K+ AH+ W      +  FL IF  +  +  +    L+H + F+S  NH+ +  F T+
Sbjct: 6   RKIRAHQSWDPKFFKNINFLDIFSYWKIHMEYVATWLMHSNEFRSLPNHEKLAIFKTV 63


>AF016681-12|AAB66170.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein47 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -3

Query: 225 IFLIIFGLF*YYYNFTVIVLVHISTFKSYSNHQYIFFVTI 106
           ++  I     ++ NFT I+L+    FKSY  + + FFV +
Sbjct: 13  LYFNIVAFISFFLNFTTILLI---IFKSYKFNNFRFFVLV 49


>AF014939-7|AAB63929.2|  343|Caenorhabditis elegans Serpentine
           receptor, class h protein192 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 195 YYYNFTVIVLVHISTFKSYSNHQYIFFVTIESWLY 91
           Y Y   ++VL    T+ +  +  YIF V IES+++
Sbjct: 181 YIYEAPILVLSESLTYHATISVVYIFLVLIESFIF 215


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,153,874
Number of Sequences: 27780
Number of extensions: 196349
Number of successful extensions: 432
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)