Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2247
         (588 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   4.4  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   5.8  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    21   5.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   7.7  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 225 PYTLSSGSTTA*ESLGGPILHVPTW*CK-DITMVLIAHSQYGSEP 356
           P T SSGS  +  S     LH+P      D   V+  H Q+   P
Sbjct: 36  PATTSSGSPASVASNASAPLHIPAKRAAYDCEGVIRHHGQWNYSP 80


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -3

Query: 205 VDASIIPKPICAHSTVPTIMIAEKAA 128
           V   + P P+  HST P + +    A
Sbjct: 318 VMTELYPSPVPGHSTSPNLPLTHNIA 343


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 31  YNFISLKLP*INNLTLQLKFKRKRLTMFVLSYQRLF 138
           Y  ++  +  I N+T+Q   + K L M +   QRL+
Sbjct: 23  YEEVAAVIDNIENITMQQLQEMKYLEMVLKEAQRLY 58


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 191 NSETNLCTQYCTYNND 144
           NSE N   QY T N D
Sbjct: 456 NSERNQIGQYVTVNGD 471


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 31  YNFISLKLP*INNLTLQLKFKRKRLTMFVLSYQR 132
           Y F ++    + NLT QL +   +L  F L  QR
Sbjct: 448 YGFHNVTNTTLQNLTPQLNYISMKLQSFPLLSQR 481


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,324
Number of Sequences: 336
Number of extensions: 3185
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)