Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2247
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    27   2.0  
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    26   3.5  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   6.2  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    25   6.2  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   6.2  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    25   8.2  

>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = -2

Query: 506 IRKLFKSPSRHGYFIGSYKIRNKI 435
           IR+ F S ++HGY I  ++IRN+I
Sbjct: 71  IREFFDS-AKHGYVIPKHEIRNRI 93


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
 Frame = -3

Query: 247 DPELRVYGIEGL---RVVDASIIPKPICAHS--TVPTIMIAEKAAD 125
           D  L+V+ +E +    ++D   +PK IC  +  ++ T +IA  +A+
Sbjct: 111 DKSLKVFDVESIDLVNIIDLEFLPKAICCFNSPSLKTSLIAVSSAE 156


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -3

Query: 376  SCSEHTPGSDPYWECAIRTMVISLHHQVGTCK 281
            +C+ H    DP+W   I    +   H++G  K
Sbjct: 952  TCANHVIILDPFWNPYIEEQAVDRAHRIGQDK 983


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 376  SCSEHTPGSDPYWECAIRTMVISLHHQVG 290
            +C+ H    DP+W  ++    I   H++G
Sbjct: 1050 TCANHVFIMDPWWSWSVEAQAIDRIHRLG 1078


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 140 SNHYCRYSTVCTNWFRNYTCVDHSKTFNAVH 232
           SN+   +ST   N+F +    DHS+  N V+
Sbjct: 722 SNNATDFSTAFNNYFADGPNADHSEVINGVN 752


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -2

Query: 542 RDTRSFISFPKIIRKLFKSPSRHGYFIG 459
           R  +SF+   ++++  +K     G+F+G
Sbjct: 270 RKNKSFLRLKQVVQTTYKEAGMRGFFVG 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,349
Number of Sequences: 5004
Number of extensions: 51652
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)