Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2247
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0682 + 19858131-19858230,19858313-19858954,19859041-198600... 39 0.003
02_05_0304 + 27721413-27721479,27721561-27722208,27722399-277233... 37 0.014
03_01_0127 + 988066-988171,988259-988881,988986-989396,989463-99... 36 0.018
08_02_0598 - 19149218-19149524,19150325-19150896,19151374-191517... 35 0.055
10_08_0357 - 17158414-17160150,17160534-17160710 33 0.13
09_03_0047 - 11867302-11867356,11867461-11868032,11868485-118688... 33 0.17
10_08_0359 - 17167829-17169595,17169976-17169996 33 0.22
10_08_0354 - 17104223-17106061,17106770-17106794,17107317-171075... 32 0.39
04_04_0862 + 28843654-28844386,28844486-28844895,28844995-288455... 30 1.2
12_02_1259 - 27382639-27384284,27386570-27386612 29 3.6
02_04_0656 - 24769069-24770814,24771552-24771608,24773307-247735... 29 3.6
12_02_1252 - 27346314-27347327 28 4.8
09_06_0034 + 20370672-20371109,20371120-20371515 28 4.8
07_03_1777 + 29442542-29442652,29443394-29443455,29443540-294436... 28 4.8
06_03_0980 + 26520832-26520922,26521021-26521409,26521612-265219... 28 4.8
11_06_0366 + 22744584-22744835,22745248-22745335,22745657-227457... 27 8.4
11_06_0363 + 22724802-22725053,22725466-22725553,22725875-227259... 27 8.4
>10_08_0682 +
19858131-19858230,19858313-19858954,19859041-19860016,
19860105-19860147
Length = 586
Score = 38.7 bits (86), Expect = 0.003
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Frame = -3
Query: 514 PKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYG------ASLFL--ADYPS--CSE 365
P + NY + +D++ + I+ ++ +S F + S+F A++P
Sbjct: 445 PSVTFNYFREAEDLERCVHGIETIERVIQSRAFSNFTYANASVESIFTDSANFPVNLLPR 504
Query: 364 HTPGSDPYWECAIRTMVISLHHQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDAS 194
H S + + T V+++ H G C +G AVVD + RV+G++GLRV+D+S
Sbjct: 505 HVNDSRSPEQYCMDT-VMTIWHYHGGCHVG------AVVDDDYRVFGVQGLRVIDSS 554
>02_05_0304 +
27721413-27721479,27721561-27722208,27722399-27723371,
27724196-27724237,27724379-27724466,27724911-27725016,
27726499-27726614
Length = 679
Score = 36.7 bits (81), Expect = 0.014
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -3
Query: 355 GSDPY-WECAIRTMVISLHHQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDAS 194
GSDP E R V+++ H G C++G VVD + RV GIE LRV+D S
Sbjct: 496 GSDPRALEQFCRDTVMTIWHYHGGCQVG------RVVDRDYRVLGIEALRVIDGS 544
>03_01_0127 +
988066-988171,988259-988881,988986-989396,989463-990037,
990137-990194
Length = 590
Score = 36.3 bits (80), Expect = 0.018
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = -3
Query: 325 RTMVISLHHQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDAS 194
R V+++ H G C +G AVVD + RV G+ GLRVVD+S
Sbjct: 516 RETVMTIWHYHGGCHVG------AVVDQDYRVLGVRGLRVVDSS 553
>08_02_0598 -
19149218-19149524,19150325-19150896,19151374-19151762,
19151850-19152163,19152312-19152356,19153451-19153805,
19154361-19154430
Length = 683
Score = 34.7 bits (76), Expect = 0.055
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -3
Query: 325 RTMVISLHHQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDASII 188
R V+++ H G C +G VVD + RV G+ GLRV+D S +
Sbjct: 526 RDTVVTIWHYHGGCHVGK------VVDQQYRVIGVSGLRVIDGSTL 565
>10_08_0357 - 17158414-17160150,17160534-17160710
Length = 637
Score = 33.5 bits (73), Expect = 0.13
Identities = 21/67 (31%), Positives = 33/67 (49%)
Frame = -3
Query: 301 HQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDASIIPKPICAHSTVPTIMIAEKAADM 122
HQ+G+C+MG S VD + EGL V D S++P + + + IA ++
Sbjct: 572 HQMGSCRMG-ASPRDGAVDGAGESWEAEGLYVCDGSLLPTAVGVNPMITIQSIAYCLSNG 630
Query: 121 IKQTWSN 101
I T S+
Sbjct: 631 IADTLSH 637
>09_03_0047 -
11867302-11867356,11867461-11868032,11868485-11868873,
11869018-11869331,11871028-11871382,11872004-11872076
Length = 585
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -3
Query: 325 RTMVISLHHQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDAS 194
R VI++ H G C +G VVD + RV G+ G+RVVD S
Sbjct: 512 RDTVITIWHYHGGCHVGK------VVDQQHRVLGVSGVRVVDGS 549
>10_08_0359 - 17167829-17169595,17169976-17169996
Length = 595
Score = 32.7 bits (71), Expect = 0.22
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = -3
Query: 367 EHTPGSDPYWECAIRTMVISLHHQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDASII 188
E T P + V+ HQ+G+C+MG S VD + EGL V D S++
Sbjct: 503 EVTVEKGPMHSTTDKWSVLCSAHQMGSCRMG-ASPRDGAVDVAGESWEAEGLYVCDGSLL 561
Query: 187 PKPICAHSTVPTIMIA 140
P + + + IA
Sbjct: 562 PTAVGVNPMITIQSIA 577
>10_08_0354 -
17104223-17106061,17106770-17106794,17107317-17107561,
17108432-17108677
Length = 784
Score = 31.9 bits (69), Expect = 0.39
Identities = 19/64 (29%), Positives = 32/64 (50%)
Frame = -3
Query: 301 HQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDASIIPKPICAHSTVPTIMIAEKAADM 122
HQ+G+C+MG S + VD + EGL V D S++P + + + +A A
Sbjct: 698 HQMGSCRMG-RSAKHGGVDGGGESWEAEGLYVCDGSLLPTAVGVNPMITIESVAYCVAKG 756
Query: 121 IKQT 110
I ++
Sbjct: 757 IAES 760
>04_04_0862 +
28843654-28844386,28844486-28844895,28844995-28845560,
28845737-28845803
Length = 591
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -3
Query: 316 VISLHHQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDAS 194
V+++ H G C++ VVD E RV G++ LRV+D S
Sbjct: 517 VMTIWHYHGGCQVN------RVVDAEYRVIGVDALRVIDGS 551
>12_02_1259 - 27382639-27384284,27386570-27386612
Length = 562
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 113 LFYHISGFFSNHYCRYSTVCTNWFRNYTCVDH 208
LFY + G S Y VC W+R+ DH
Sbjct: 509 LFYLVVGAMSAANLAYFVVCALWYRSKNIADH 540
>02_04_0656 -
24769069-24770814,24771552-24771608,24773307-24773582,
24773675-24773965
Length = 789
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = -3
Query: 301 HQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDASIIPKPICAHSTVPTIMIAEKAADM 122
H +G+C+MG + A VD + E L V D S++P + + + +A A+
Sbjct: 721 HHMGSCRMGATAGDGA-VDARGESWEAERLYVCDGSVLPTAVGVNPMITIQSVAYCLANG 779
Query: 121 IKQTWS 104
I + S
Sbjct: 780 IADSLS 785
>12_02_1252 - 27346314-27347327
Length = 337
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 454 IKYAIKLGESEPFKKYGASLFLADYPSCSEHTPGSDPYW 338
I YA +LGE++PFK F YP+ + +PYW
Sbjct: 98 IDYAPELGETKPFKP-----FTHRYPTPHLASASPEPYW 131
>09_06_0034 + 20370672-20371109,20371120-20371515
Length = 277
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 427 SEPFKKYGASLFLADYPSCSEHTPGSDPYWE 335
SEP + + F + +PS +E T S P+WE
Sbjct: 243 SEPAADHQSFNFHSSWPSSTEQTCSSTPWWE 273
>07_03_1777 +
29442542-29442652,29443394-29443455,29443540-29443681,
29444043-29444261,29444374-29444440,29444883-29445288,
29445669-29445816,29445903-29446063,29446320-29446419,
29446522-29446596,29446677-29446811,29446921-29447013,
29447475-29447657,29447738-29447842,29448614-29448772,
29449142-29449186,29449296-29449517,29449775-29449881,
29449971-29450027,29450132-29450213,29450291-29450455
Length = 947
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -3
Query: 526 LFLFPKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYGASL 395
L LFP L G ++ ++ + I+ I G SE K++GASL
Sbjct: 651 LDLFPYLVGIVTRSFDHLEVTINIIEDYIIFGGSEFLKRHGASL 694
>06_03_0980 +
26520832-26520922,26521021-26521409,26521612-26521927,
26522869-26523769,26524103-26524184
Length = 592
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 316 VISLHHQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDAS 194
V +L H G C G +VVD + RV+ + LRVVD S
Sbjct: 513 VATLWHYHGGCVAG------SVVDRDFRVFRVRALRVVDGS 547
>11_06_0366 +
22744584-22744835,22745248-22745335,22745657-22745702,
22746159-22746345,22746436-22746507,22746597-22746728
Length = 258
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = -1
Query: 405 EQVYFWRIIHHALNIRLAQIRIGNVLSEPWLYLYITK*EHARWVHLAILMRLWIQS*ECT 226
+++Y W +I + I +G L ++Y+Y+ K R +H + L I+ E T
Sbjct: 179 QKLYMWTLIKRKELLVADAIVLG--LRTKFMYVYVPKLTMERRIHYDEVESLSIECLEAT 236
Query: 225 ALKVLE 208
+ VLE
Sbjct: 237 GMLVLE 242
>11_06_0363 +
22724802-22725053,22725466-22725553,22725875-22725920,
22726377-22726563,22726654-22726725,22726815-22726946
Length = 258
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/66 (27%), Positives = 32/66 (48%)
Frame = -1
Query: 405 EQVYFWRIIHHALNIRLAQIRIGNVLSEPWLYLYITK*EHARWVHLAILMRLWIQS*ECT 226
+++Y W +I + I +G L ++Y+Y+ K R +H + L I+ E T
Sbjct: 179 QKLYMWTLIKRKELLVADAIVLG--LRTKFMYVYVPKLTMERRIHYDEVESLSIECLEAT 236
Query: 225 ALKVLE 208
+ VLE
Sbjct: 237 GMLVLE 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,348,449
Number of Sequences: 37544
Number of extensions: 319998
Number of successful extensions: 677
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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