Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2247
(588 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase p... 92 2e-18
AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase p... 92 2e-18
BC117674-1|AAI17675.2| 1240|Homo sapiens NFASC protein protein. 31 4.0
AL391822-8|CAI14664.1| 1040|Homo sapiens neurofascin homolog (ch... 31 4.0
AL391822-5|CAI14660.1| 1347|Homo sapiens neurofascin homolog (ch... 31 4.0
AL391822-4|CAI14661.1| 1157|Homo sapiens neurofascin homolog (ch... 31 4.0
AL391822-3|CAI14659.1| 1240|Homo sapiens neurofascin homolog (ch... 31 4.0
AL391822-2|CAI14657.1| 619|Homo sapiens neurofascin homolog (ch... 31 4.0
AL391822-1|CAI14656.1| 302|Homo sapiens neurofascin homolog (ch... 31 4.0
AB177861-1|BAD66839.1| 836|Homo sapiens KIAA0756 splice variant... 31 4.0
>BC034502-1|AAH34502.1| 594|Homo sapiens choline dehydrogenase
protein.
Length = 594
Score = 91.9 bits (218), Expect = 2e-18
Identities = 56/133 (42%), Positives = 71/133 (53%)
Frame = -3
Query: 514 PKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYGASLFLADYPSCSEHTPGSDPYWE 335
P + NYL D +E + +KL E F + + F H SD +
Sbjct: 446 PVIQPNYLSTETD----IEDFRLCVKLTR-EIFAQEALAPFRGKELQPGSHIQ-SDKEID 499
Query: 334 CAIRTMVISLHHQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDASIIPKPICAHSTVP 155
+R S +H TCKMG PSD AVVDP+ RV G+E LRVVDASI+P + + P
Sbjct: 500 AFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAP 559
Query: 154 TIMIAEKAADMIK 116
TIMIAEKAAD+IK
Sbjct: 560 TIMIAEKAADIIK 572
>AJ272267-1|CAB75961.1| 482|Homo sapiens choline dehydrogenase
protein.
Length = 482
Score = 91.9 bits (218), Expect = 2e-18
Identities = 56/133 (42%), Positives = 71/133 (53%)
Frame = -3
Query: 514 PKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYGASLFLADYPSCSEHTPGSDPYWE 335
P + NYL D +E + +KL E F + + F H SD +
Sbjct: 334 PVIQPNYLSTETD----IEDFRLCVKLTR-EIFAQEALAPFRGKELQPGSHIQ-SDKEID 387
Query: 334 CAIRTMVISLHHQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDASIIPKPICAHSTVP 155
+R S +H TCKMG PSD AVVDP+ RV G+E LRVVDASI+P + + P
Sbjct: 388 AFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAP 447
Query: 154 TIMIAEKAADMIK 116
TIMIAEKAAD+IK
Sbjct: 448 TIMIAEKAADIIK 460
>BC117674-1|AAI17675.2| 1240|Homo sapiens NFASC protein protein.
Length = 1240
Score = 30.7 bits (66), Expect = 4.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 583 NAFTTKIYRLSGIKETQGPLFLFPKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYG 404
N FT K+ G+ E + P F++P+ + + MD LLE I + + +KK G
Sbjct: 227 NPFTLKVLTTRGVAE-RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 285
>AL391822-8|CAI14664.1| 1040|Homo sapiens neurofascin homolog
(chicken) protein.
Length = 1040
Score = 30.7 bits (66), Expect = 4.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 583 NAFTTKIYRLSGIKETQGPLFLFPKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYG 404
N FT K+ G+ E + P F++P+ + + MD LLE I + + +KK G
Sbjct: 196 NPFTLKVLTTRGVAE-RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 254
>AL391822-5|CAI14660.1| 1347|Homo sapiens neurofascin homolog
(chicken) protein.
Length = 1347
Score = 30.7 bits (66), Expect = 4.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 583 NAFTTKIYRLSGIKETQGPLFLFPKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYG 404
N FT K+ G+ E + P F++P+ + + MD LLE I + + +KK G
Sbjct: 227 NPFTLKVLTTRGVAE-RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 285
>AL391822-4|CAI14661.1| 1157|Homo sapiens neurofascin homolog
(chicken) protein.
Length = 1157
Score = 30.7 bits (66), Expect = 4.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 583 NAFTTKIYRLSGIKETQGPLFLFPKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYG 404
N FT K+ G+ E + P F++P+ + + MD LLE I + + +KK G
Sbjct: 221 NPFTLKVLTTRGVAE-RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 279
>AL391822-3|CAI14659.1| 1240|Homo sapiens neurofascin homolog
(chicken) protein.
Length = 1240
Score = 30.7 bits (66), Expect = 4.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 583 NAFTTKIYRLSGIKETQGPLFLFPKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYG 404
N FT K+ G+ E + P F++P+ + + MD LLE I + + +KK G
Sbjct: 227 NPFTLKVLTTRGVAE-RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 285
>AL391822-2|CAI14657.1| 619|Homo sapiens neurofascin homolog
(chicken) protein.
Length = 619
Score = 30.7 bits (66), Expect = 4.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 583 NAFTTKIYRLSGIKETQGPLFLFPKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYG 404
N FT K+ G+ E + P F++P+ + + MD LLE I + + +KK G
Sbjct: 227 NPFTLKVLTTRGVAE-RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 285
>AL391822-1|CAI14656.1| 302|Homo sapiens neurofascin homolog
(chicken) protein.
Length = 302
Score = 30.7 bits (66), Expect = 4.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 583 NAFTTKIYRLSGIKETQGPLFLFPKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYG 404
N FT K+ G+ E + P F++P+ + + MD LLE I + + +KK G
Sbjct: 227 NPFTLKVLTTRGVAE-RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 285
>AB177861-1|BAD66839.1| 836|Homo sapiens KIAA0756 splice variant 1
protein.
Length = 836
Score = 30.7 bits (66), Expect = 4.0
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -3
Query: 583 NAFTTKIYRLSGIKETQGPLFLFPKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYG 404
N FT K+ G+ E + P F++P+ + + MD LLE I + + +KK G
Sbjct: 35 NPFTLKVLTTRGVAE-RTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGG 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,726,525
Number of Sequences: 237096
Number of extensions: 1812430
Number of successful extensions: 3440
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3440
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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