Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2247
         (588 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical pr...    79   2e-15
AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical ...    28   5.7  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81491-6|CAE17746.1|  185|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related...    27   9.9  

>Z66494-4|CAA91263.1|  599|Caenorhabditis elegans Hypothetical
           protein C34C6.4 protein.
          Length = 599

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 1/134 (0%)
 Frame = -3

Query: 514 PKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYGASLFLADYPSCSEHTPGSDPYWE 335
           P +  NY++   D     + I+ + +L  S+ F ++     LA  P C      SD   +
Sbjct: 455 PIINPNYMEEDSDWREFRKCIRVSRELFASKAFDEFRGKE-LAPGPDCQ-----SDADID 508

Query: 334 CAIRTMVISLHHQVGTCKMGPPSDSYAVVDPE-LRVYGIEGLRVVDASIIPKPICAHSTV 158
             ++    S +H   TCKMG  +D  AVV+PE + VYG E L+VVDAS++P  +  +   
Sbjct: 509 RFVKEKAASAYHPSCTCKMGSENDKMAVVNPETMGVYGTENLKVVDASVMPSIVSGNLNA 568

Query: 157 PTIMIAEKAADMIK 116
           P IM+AE+AAD+IK
Sbjct: 569 PVIMMAERAADLIK 582


>AF003388-4|AAB54269.1| 1150|Caenorhabditis elegans Hypothetical
            protein R10F2.6 protein.
          Length = 1150

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 426  RSLLKSMEQVYFWRIIHHALNIR 358
            R  +    QVYFWR++H+ L  R
Sbjct: 934  RQSITCCNQVYFWRMVHYELLFR 956


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
 Frame = -2

Query: 329 YQNHGYIFTSPSRNMQDGST*RFLCGCGSRAKXXXXXXXXXXXRKYNSE--TNLCTQYCT 156
           Y N+ Y   S S+    GST R+   C S                YN+   ++    YCT
Sbjct: 110 YSNNMY--NSNSQYSNSGSTCRYSTDCYSGQMCSNGVCVAQYGTSYNNAMYSSSTGNYCT 167

Query: 155 YNNDC 141
           Y+N C
Sbjct: 168 YDNTC 172


>Z81491-6|CAE17746.1|  185|Caenorhabditis elegans Hypothetical
           protein D1086.8 protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 125 ISGFFSNHYCRYSTVCTNWFRNYTCV 202
           +  FF N      T CTNW  N  C+
Sbjct: 131 VENFFDNAEVSKDTQCTNWSDNRACL 156


>U80447-8|AAB37812.3|  900|Caenorhabditis elegans Patched related
           family protein 10 protein.
          Length = 900

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -3

Query: 268 SDSYAVVDPELR---VYGIEGLRVVDASIIPKPICAHSTVPTI 149
           +D YA+V P      +  +  + V+ A +IP+P+C+     TI
Sbjct: 717 TDQYALVVPNTMQDIIVAVACMLVISALLIPQPVCSFWVAVTI 759


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,495,639
Number of Sequences: 27780
Number of extensions: 290311
Number of successful extensions: 592
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)