Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2247
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.   107   8e-26
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   3.9  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   5.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.8  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score =  107 bits (257), Expect = 8e-26
 Identities = 51/136 (37%), Positives = 71/136 (52%)
 Frame = -3

Query: 514 PKLYGNYLKARQDMDTLLEAIKYAIKLGESEPFKKYGASLFLADYPSCSEHTPGSDPYWE 335
           P ++ N L    D   +++AI+   KL  +   +  G      +   C E    SD YW 
Sbjct: 473 PVIWSNDLATEHDRSVMIQAIRVVQKLVNTTVMRDLGVEFQKIELKQCDEFVEDSDDYWN 532

Query: 334 CAIRTMVISLHHQVGTCKMGPPSDSYAVVDPELRVYGIEGLRVVDASIIPKPICAHSTVP 155
           C I+    + +HQ GT KMGP  D  AVV P L+V+GI GLRV DAS+ P+ I  +    
Sbjct: 533 CVIQYNTRAENHQTGTAKMGPSYDPMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVAS 592

Query: 154 TIMIAEKAADMIKQTW 107
             M+ E+AAD IK+ W
Sbjct: 593 VNMVGERAADFIKEDW 608


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 569 QNLQVIWN*RDTRSFISFPKIIRKL 495
           +N++++    DT  FIS  KII+++
Sbjct: 336 RNIEIVAKNNDTLQFISGIKIIKQI 360


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 546 LKRHKVLYFFSQNYTEII*KPVKTWILYW 460
           L+RH   YF  Q Y   +   V +W+ +W
Sbjct: 240 LQRHTG-YFLIQVYVPCVLIVVLSWVSFW 267


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 194 YNSETNLCTQYCTYNNDC 141
           +NS T LC  + TY   C
Sbjct: 142 FNSGTILCVPFTTYTPVC 159


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +3

Query: 390 RNRLAPYFLKGSDSPNFIA 446
           R+++AP  ++  ++PN+ A
Sbjct: 194 RDKVAPILVRARETPNYTA 212


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,195
Number of Sequences: 438
Number of extensions: 3718
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)