Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2246
(440 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 30 0.95
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 29 1.3
08_01_0203 + 1639993-1641141 29 1.3
09_06_0293 + 22086359-22086496,22086604-22087213,22087407-220879... 28 2.9
07_03_1026 - 23369298-23370326 28 2.9
09_03_0051 + 11902322-11903125 28 3.8
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468... 28 3.8
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 28 3.8
08_02_1455 + 27230134-27231110,27231195-27231327,27231417-272315... 27 5.1
02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495 27 5.1
04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,728... 27 8.8
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 29.9 bits (64), Expect = 0.95
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 228 LDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVLQFKLPSSA 383
L KGSPRS + P P E +E+Q+ DG L++ V+Q PS A
Sbjct: 3519 LQDKGSPRSTQ--PPPPIESSEKESQIAE---DGQTVLLQSSVVQESTPSLA 3565
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 118 TTPRTLPRMFGSESCSAAGIAHATPITIKPTRH 20
T PRT+P+ E C +G A AT + RH
Sbjct: 498 TVPRTVPQPNDHEDCRVSGFAEATNFNDQAGRH 530
>08_01_0203 + 1639993-1641141
Length = 382
Score = 29.5 bits (63), Expect = 1.3
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +3
Query: 15 MKCLVGLMVIGVAWAMPAAEQDSDP-NILGSVLGVVKECVDGDVTLCLK 158
++C+V +++ V A A E D P NILG + G++ + DVTL ++
Sbjct: 151 IECVVNVVLDPVVTAGDAPELDHPPSNILGHLAGLLGDKGTADVTLVVR 199
>09_06_0293 +
22086359-22086496,22086604-22087213,22087407-22087938,
22088617-22089151
Length = 604
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 200 GDHVGRWRYSGQQRLAQ 250
GD VG WR+ G +RLA+
Sbjct: 450 GDRVGHWRHGGLKRLAE 466
>07_03_1026 - 23369298-23370326
Length = 342
Score = 28.3 bits (60), Expect = 2.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -3
Query: 93 CSGQSLVRQQASPTPRRSPLNRPDTS 16
C+ S R Q SPTP +P RPD S
Sbjct: 263 CATTSSPRVQPSPTPSPAPAARPDPS 288
>09_03_0051 + 11902322-11903125
Length = 267
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 12/65 (18%)
Frame = +3
Query: 270 PLPEEPKAREAQVESRLVDGVADFLE------------NYVLQFKLPSSAVEGMRRSLDE 413
P P E + R ++V+++ + VA+F + NY K PS EG RRS +
Sbjct: 160 PPPTEEEVRRSEVDAKAEELVAEFQDDEQRRQRLDSIFNYTQMLKRPSPTEEGARRSEVD 219
Query: 414 ARGQK 428
A ++
Sbjct: 220 AEAEE 224
>04_04_0369 -
24745140-24745510,24746005-24746089,24746746-24746878,
24747764-24748584
Length = 469
Score = 27.9 bits (59), Expect = 3.8
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +3
Query: 156 KEKALRYVETLRSKREITLVDGVTLDSKGS--PRSARALEPLPEEPKAREAQVES--RLV 323
KE+ +RY+ L K + + TL ++ S R L + K R +E RL
Sbjct: 286 KERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSENSDLKIRVQTMEQQVRLQ 345
Query: 324 DGVADFLENYVLQFKLPSSAV 386
D + D L + + Q K+ + V
Sbjct: 346 DALNDRLRDEIQQLKVATGQV 366
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 27.9 bits (59), Expect = 3.8
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 288 KAREAQVESRLVDGVADFLENYVLQFKLPSSAVEGMRRSLD 410
K RE+ ++ RL+ V DF E Y Q K +++ +D
Sbjct: 121 KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEID 161
>08_02_1455 +
27230134-27231110,27231195-27231327,27231417-27231501,
27233372-27233571
Length = 464
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Frame = +3
Query: 156 KEKALRYVETLRSKREITLVDGVTLDSKGS--PRSARALEPLPEEPKAREAQVE--SRLV 323
KE+ +RY++ L K ++ + TL ++ + R + L E K R +E ++L
Sbjct: 338 KERKMRYIQELEHKVQVLQTEATTLSAQLTMLQRDSTGLATQNNELKIRLQAMEQQAQLR 397
Query: 324 DGVADFLENYVLQFKLPSSAVEGMRRS 404
D + + L V + KL + + R S
Sbjct: 398 DALNEALTAEVQRLKLATGEITDGRMS 424
>02_05_0318 + 27856187-27856879,27857050-27857385,27858743-27859495
Length = 593
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +3
Query: 51 AWAMPA-AEQDSDPNILGSVLGVVKECVDGD 140
AW PA AEQ P + SV+ V K C+ D
Sbjct: 523 AWMDPALAEQTCPPGSVASVVSVAKACLHRD 553
>04_01_0568 - 7279478-7279590,7279749-7279988,7280078-7280141,
7280242-7280547,7280643-7280857,7281395-7281689,
7281906-7281983,7282070-7282705,7283016-7283102,
7283945-7284265,7285503-7287599
Length = 1483
Score = 26.6 bits (56), Expect = 8.8
Identities = 23/88 (26%), Positives = 37/88 (42%)
Frame = +3
Query: 99 GSVLGVVKECVDGDVTLCLKEKALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLP 278
G +GVV G TL + R VE + +VDGV + + G +P
Sbjct: 1264 GEKIGVVGRTGSGKSTLV--QALFRLVEPVEGH---IIVDGVDIGTLGLHDLRSRFGVIP 1318
Query: 279 EEPKAREAQVESRLVDGVADFLENYVLQ 362
+EP E + S +D + + E+ + Q
Sbjct: 1319 QEPVLFEGTIRSN-IDPIGRYSEDEIWQ 1345
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,612,600
Number of Sequences: 37544
Number of extensions: 177945
Number of successful extensions: 663
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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