Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2246
         (440 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   6.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   6.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   7.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.9  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 120 KECVDGDVTLCLKEKALRYVETLRSKREITLVDGVTL 230
           KE +  DV + +       ++ +R+ R+ + +DGVTL
Sbjct: 125 KEGLQFDVLVKVDMTRQYLLQLIRNLRQSSALDGVTL 161


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 253 LPGPWSLCPRSL 288
           LP  W +C RSL
Sbjct: 24  LPNNWRICDRSL 35


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 138 DVTLCLKEKAL 170
           D+TLCLK++ L
Sbjct: 23  DITLCLKQENL 33


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -3

Query: 69  QQASPTPRRSPLNRPD 22
           QQ  P PR  P NR D
Sbjct: 72  QQDMPYPRFPPYNRMD 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,561
Number of Sequences: 438
Number of extensions: 1579
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11450997
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)