Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2240
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    25   8.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    25   8.4  

>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -2

Query: 224 LRVLAVGRDSSDFIFSSTALLSGFLI 147
           LRV +   D +D  F  TALLSG+LI
Sbjct: 86  LRVYSTA-DEADESFEMTALLSGWLI 110


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -2

Query: 455 LRERSSCGTKANERSQFTYEPNRL*ECSFIGVQN-ETAMYQYTRSINSDADYTLLD 291
           LR +S    ++ E        N + +    G++  + A+Y+  RSIN DAD  + D
Sbjct: 131 LRGQSPASLRSEESFTLKERQNAINKTRAFGMRLWKPALYKKFRSINRDADIDIHD 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,091
Number of Sequences: 5004
Number of extensions: 36065
Number of successful extensions: 79
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)