Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2240
         (501 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118669-1|AAM50529.1|  458|Drosophila melanogaster AT01906p pro...    28   6.2  
AF417921-1|AAL16644.1| 2669|Drosophila melanogaster nucleosome r...    28   6.2  
AF318274-1|AAK13422.1| 1305|Drosophila melanogaster putative met...    28   6.2  
AE014296-61|AAN11431.1| 2669|Drosophila melanogaster CG32346-PA,...    28   6.2  
AE014296-60|AAF47361.2| 2649|Drosophila melanogaster CG32346-PB,...    28   6.2  
AE014134-144|AAN10484.1|  874|Drosophila melanogaster CG3022-PB,...    28   6.2  
AE014134-143|AAF51465.2| 1305|Drosophila melanogaster CG3022-PA,...    28   6.2  

>AY118669-1|AAM50529.1|  458|Drosophila melanogaster AT01906p
           protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 364 PMKEHSHSLFGS*VNCDRSLAFVPQLDLSRSE 459
           PM+ H H+L       DRS+ + PQ+++ RS+
Sbjct: 333 PMERHLHNLTLEISATDRSVVYQPQVEVCRSQ 364


>AF417921-1|AAL16644.1| 2669|Drosophila melanogaster nucleosome
            remodeling factor largesubunit NURF301 protein.
          Length = 2669

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 287  NNLKAYNPRRY*YYEYTDTLQSHFVPR*RN 376
            +N + YNP+   +Y+  + L+S+FV + +N
Sbjct: 2630 DNCRYYNPKESSFYKCAEALESYFVQKIKN 2659


>AF318274-1|AAK13422.1| 1305|Drosophila melanogaster putative
           metabotropic GABA-B receptorsubtype 3 protein.
          Length = 1305

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 364 PMKEHSHSLFGS*VNCDRSLAFVPQLDLSRSE 459
           PM+ H H+L       DRS+ + PQ+++ RS+
Sbjct: 764 PMERHLHNLTLEISATDRSVVYQPQVEVCRSQ 795


>AE014296-61|AAN11431.1| 2669|Drosophila melanogaster CG32346-PA,
            isoform A protein.
          Length = 2669

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 287  NNLKAYNPRRY*YYEYTDTLQSHFVPR*RN 376
            +N + YNP+   +Y+  + L+S+FV + +N
Sbjct: 2630 DNCRYYNPKESSFYKCAEALESYFVQKIKN 2659


>AE014296-60|AAF47361.2| 2649|Drosophila melanogaster CG32346-PB,
            isoform B protein.
          Length = 2649

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 287  NNLKAYNPRRY*YYEYTDTLQSHFVPR*RN 376
            +N + YNP+   +Y+  + L+S+FV + +N
Sbjct: 2610 DNCRYYNPKESSFYKCAEALESYFVQKIKN 2639


>AE014134-144|AAN10484.1|  874|Drosophila melanogaster CG3022-PB,
           isoform B protein.
          Length = 874

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 364 PMKEHSHSLFGS*VNCDRSLAFVPQLDLSRSE 459
           PM+ H H+L       DRS+ + PQ+++ RS+
Sbjct: 333 PMERHLHNLTLEISATDRSVVYQPQVEVCRSQ 364


>AE014134-143|AAF51465.2| 1305|Drosophila melanogaster CG3022-PA,
           isoform A protein.
          Length = 1305

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 364 PMKEHSHSLFGS*VNCDRSLAFVPQLDLSRSE 459
           PM+ H H+L       DRS+ + PQ+++ RS+
Sbjct: 764 PMERHLHNLTLEISATDRSVVYQPQVEVCRSQ 795


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,566,470
Number of Sequences: 53049
Number of extensions: 368001
Number of successful extensions: 772
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1784022528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)