Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2240
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AC024832-5|AAF59611.1|  130|Caenorhabditis elegans Hypothetical ...    28   4.4  

>Z68337-3|CAA92750.2|  712|Caenorhabditis elegans Hypothetical
           protein M7.3 protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -3

Query: 499 EEDEKRSNRDTKATHFEKGQAVEQKPTNGHSLPMNQIDYESVP 371
           EEDE+ S+    +T++   +  EQ P N  S   +  D  S+P
Sbjct: 591 EEDEELSDFSASSTNYGMSRIFEQPPRNVFSASTSVFDSNSLP 633


>AC024832-5|AAF59611.1|  130|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.6 protein.
          Length = 130

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -3

Query: 499 EEDEKRSNRDTKATHFEKGQAVEQKPTNGHSLPMNQIDYE 380
           EED  R +   +   F +   VE+KPT    +P N + +E
Sbjct: 11  EEDLLRDSSSEQQEFFMQRPTVEKKPTEAPKMPNNVVAHE 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,346,490
Number of Sequences: 27780
Number of extensions: 196010
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)