Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2237
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    27   1.9  
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc...    26   4.4  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   7.7  

>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 357 EFSVSTRILRDETKVKGSYKDFSVVGVRGPDG 452
           EFSV+  I   +T++K  Y DF+ + ++ P+G
Sbjct: 11  EFSVNKGIFT-KTRLKSLYSDFTSLFIKNPEG 41


>SPBC2F12.05c |||sterol binding ankyrin repeat
            protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1310

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 189  WRFSHSYFMPDPLVGDFNIAGLNFQW 266
            W+F++ Y+      G+ ++AG  F+W
Sbjct: 1278 WQFNNEYWKIREEAGEAHLAGKEFEW 1303


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 282 FGITASPIGADGYRTLYFSPLSSHTEFSVS 371
           F  T++P    GY+  Y  P   +T+F +S
Sbjct: 196 FANTSAPFSTKGYKMKYKHPEYHYTDFQLS 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,347,410
Number of Sequences: 5004
Number of extensions: 48170
Number of successful extensions: 140
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)