Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2237
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0618 + 23723441-23723465,23724733-23724788,23725108-237253...    33   0.21 
05_07_0311 - 29139883-29140359,29140641-29140788,29140883-291409...    31   0.64 
12_02_0881 - 23970143-23970433,23970814-23971116,23971490-239720...    30   1.1  
06_01_0240 - 1822086-1822216,1822311-1822367,1822788-1822842,182...    29   3.4  
08_02_0846 - 21811156-21811833,21811960-21812055,21812157-218122...    27   7.9  
05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,375...    27   7.9  

>01_05_0618 +
           23723441-23723465,23724733-23724788,23725108-23725372,
           23725623-23725759,23725849-23725943,23726033-23727057,
           23727293-23727453,23727816-23727892,23727978-23728125,
           23728364-23728441,23728611-23728838
          Length = 764

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 22/77 (28%), Positives = 34/77 (44%)
 Frame = +3

Query: 129 YFSDELGYGLIAYSWEQNKSWRFSHSYFMPDPLVGDFNIAGLNFQWGAEGIFGITASPIG 308
           Y  +E   G I +   +  +   +H Y   +PLVGDF +A    +W  +G  G+    IG
Sbjct: 559 YLHEECRVGCIIHRDMRPNNILVTHDY---EPLVGDFGLA----RWQPDGDMGVDTRVIG 611

Query: 309 ADGYRTLYFSPLSSHTE 359
             GY    ++     TE
Sbjct: 612 TFGYLAPEYAQSGQITE 628


>05_07_0311 -
           29139883-29140359,29140641-29140788,29140883-29140959,
           29141227-29141387,29141785-29142803,29142905-29142996,
           29143117-29143256,29143397-29143574
          Length = 763

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +3

Query: 129 YFSDELGYGLIAYSWEQNKSWRFSHSYFMPDPLVGDFNIAGLNFQWGAEGIFGITASPIG 308
           Y  +E   G I +   +  +   +H +   +PLVGDF +A    +W  +G  G+    IG
Sbjct: 501 YLHEECRVGCIIHRDMRPNNILVTHDF---EPLVGDFGLA----RWQPDGDMGVETRVIG 553

Query: 309 ADGYRTLYFSPLSSHTE 359
             GY    ++     TE
Sbjct: 554 TFGYLAPEYAQSGQITE 570


>12_02_0881 -
           23970143-23970433,23970814-23971116,23971490-23972077,
           23972606-23972761,23972852-23972910,23974294-23974561
          Length = 554

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 19/79 (24%), Positives = 35/79 (44%)
 Frame = -3

Query: 266 PLEIQASDIEITDERVGHEIAVAESP*LVLFPRVSDETIAQFIGEVGKGVLTAGTDIESD 87
           P  +    + +TDE   + +A  + P   L PR+SD +   F+      +L A   + S 
Sbjct: 188 PKGLHCLSLRLTDEYSSNALARKQLPPPELIPRLSDNSYLHFV-LASDNILAASVVVSST 246

Query: 86  VGNESRRDNVFWS*HVFTD 30
           + +  +   + +  HV TD
Sbjct: 247 IRSSLKPGRIVF--HVITD 263


>06_01_0240 -
           1822086-1822216,1822311-1822367,1822788-1822842,
           1824585-1824674,1824848-1824995,1825095-1825351
          Length = 245

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 339 PLSSHTEFSVSTRILRDETKVKGSYKDFSVVGVRGPDGHTTAKVMDDS 482
           PL SHT   +   + RD  +  G  ++   + +R   GHT   V  +S
Sbjct: 124 PLKSHTVDEIKEAVRRDNKQRFGLLEEDGELLIRANQGHTVTTVTSES 171


>08_02_0846 -
           21811156-21811833,21811960-21812055,21812157-21812267,
           21812367-21812743,21814699-21814734,21815236-21815839
          Length = 633

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 242 IEITDERVGHEIAVAESP*LVLFPRVSDETIAQFIGEVGKG 120
           + IT+ERV HE   AE+P   +  R+S    ++F G +  G
Sbjct: 490 LRITEERVSHESPAAEAPLESIQVRLS-HVQSKFAGAISDG 529


>05_01_0471 - 3751497-3751522,3751760-3751800,3752466-3752507,
            3753249-3753310,3753398-3753584,3753692-3753826,
            3753872-3753948,3754005-3754076,3754389-3754588,
            3754675-3755020,3755463-3755519,3755655-3757433,
            3757539-3757720,3757943-3758072
          Length = 1111

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +3

Query: 132  FSDELGYGLIAYSWEQNKSWRFSHSYFMPDPLVGDFNIAGLNFQWGAEGIFGITASPIGA 311
            F   LG  + + S   + S + S  +F     VG +   G  F  GA  +  +  +  G 
Sbjct: 882  FDPFLGKWICSPSMMNSDSRKGSLGFFFFFSNVGGYQKTGRRFALGAAEMNSVIYATGGF 941

Query: 312  DGYRTLYFSPLSSHTEFSVSTR 377
            DG+  L+F   + H  +  + R
Sbjct: 942  DGFSYLHFLEDNKHATYRSAER 963


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,672,611
Number of Sequences: 37544
Number of extensions: 330116
Number of successful extensions: 925
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)