Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2236
         (540 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P19351 Cluster: Troponin T, skeletal muscle; n=46; Panc...    83   5e-15
UniRef50_UPI0000D555FF Cluster: PREDICTED: similar to CG7107-PG,...    82   9e-15
UniRef50_Q9LIR5 Cluster: Genomic DNA, chromosome 3, BAC clone:F1...    33   4.2  

>UniRef50_P19351 Cluster: Troponin T, skeletal muscle; n=46;
           Pancrustacea|Rep: Troponin T, skeletal muscle -
           Drosophila melanogaster (Fruit fly)
          Length = 397

 Score = 82.6 bits (195), Expect = 5e-15
 Identities = 39/59 (66%), Positives = 42/59 (71%)
 Frame = +3

Query: 174 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVS 350
           P    EGEGDPEFIKRQDQKRSDLD+QLKEYI EWRKQR+            QAKRKV+
Sbjct: 26  PQTPAEGEGDPEFIKRQDQKRSDLDDQLKEYITEWRKQRSKEEDELKKLKEKQAKRKVT 84


>UniRef50_UPI0000D555FF Cluster: PREDICTED: similar to CG7107-PG,
           isoform G isoform 3; n=1; Tribolium castaneum|Rep:
           PREDICTED: similar to CG7107-PG, isoform G isoform 3 -
           Tribolium castaneum
          Length = 352

 Score = 81.8 bits (193), Expect = 9e-15
 Identities = 38/55 (69%), Positives = 41/55 (74%)
 Frame = +3

Query: 186 QEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRAXXXXXXXXXXXXQAKRKVS 350
           +EG GDPEFIKRQDQKRSDLDEQL+EYI EWRKQRA            QAKRK+S
Sbjct: 31  EEGAGDPEFIKRQDQKRSDLDEQLREYITEWRKQRAKEEDELKKLKEKQAKRKIS 85


>UniRef50_Q9LIR5 Cluster: Genomic DNA, chromosome 3, BAC
           clone:F14O13; n=2; Arabidopsis thaliana|Rep: Genomic
           DNA, chromosome 3, BAC clone:F14O13 - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 224

 Score = 33.1 bits (72), Expect = 4.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +3

Query: 171 KPAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQR 290
           K   K +  G    IK +D++   +  QLKE   EWRK+R
Sbjct: 17  KETSKDQSRGRRHLIKERDEREKVMFLQLKEAEREWRKER 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 416,754,702
Number of Sequences: 1657284
Number of extensions: 6044418
Number of successful extensions: 20040
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 19401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20027
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)