Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2236
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   2.3  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   3.1  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    25   7.2  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   9.5  
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3...    25   9.5  

>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 290 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 174
           P+FA  +   L LF+Q+ P + +    FW S+ L+  +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 105 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNVESA 1
           CW  I    G S  L+  AL+L PA+    NV S+
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNVLSS 326


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 207 EFIKRQDQKRSDLDEQLKEY 266
           E +KR+DQK+ D+ E L+EY
Sbjct: 272 ELLKRRDQKQQDV-EALQEY 290


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +1

Query: 262 NTSTNGANSGPRRRMSSNALKRSRPSARFLV 354
           N     A   P    SSN+ K S PS  FLV
Sbjct: 793 NIPLGHALGNPESNNSSNSFKPSHPSQSFLV 823


>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 168 TKPAPK-QEGEGDPEFIKRQDQKRSDLDEQLKEYINE 275
           T P P+ Q  +G P F  RQ    S  ++   E +NE
Sbjct: 86  TNPQPQSQSQQGGPSFGFRQSFSDSQFEQVFNEMMNE 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,608,583
Number of Sequences: 5004
Number of extensions: 21942
Number of successful extensions: 74
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)