Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2232
         (640 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    37   0.002
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb...    33   0.035
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo...    32   0.061
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    31   0.14 
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    28   0.99 
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    26   4.0  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   5.3  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    26   5.3  
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce...    25   7.0  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   7.0  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.0  
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    25   7.0  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 23/56 (41%), Positives = 29/56 (51%)
 Frame = -2

Query: 579  ERSKNFTYLLGMSMGMLP*EKKDELLKQRDPEICLS*PPLKNKPAPMLWREDLDAF 412
            E S  + YLL M +  L  E+  ELLK++D E+      L  K    LW  DLDAF
Sbjct: 1144 EDSDAYNYLLSMPLWSLTYERYVELLKKKD-EVMAELDALIKKTPKELWLHDLDAF 1198


>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 929

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 24/82 (29%), Positives = 36/82 (43%)
 Frame = -1

Query: 391 LKIKSDRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEKAK 212
           L++   R +S      + + A KKN K   D + S      EPK+  DLI   +A E A 
Sbjct: 701 LQVPDQRTSSAKKLDKNSSKADKKNHKLKMDKVASLQELVEEPKVQPDLIFEEKAFESA- 759

Query: 211 TRKEIKKEYDPDDPTGISPSSG 146
              E + + D   P  + P+ G
Sbjct: 760 --SEAESDVDVSVPM-LKPTKG 778


>SPAC56F8.03 |||translation initiation factor IF2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1079

 Score = 32.3 bits (70), Expect = 0.061
 Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 8/110 (7%)
 Frame = -1

Query: 451 TGTNAVAGRSRRVSDQN*TKLKIKSDRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRR 272
           +G N     + + S QN  +L  KS+    +S K TSK   GKKN+ +   +   E+   
Sbjct: 22  SGQNEYLDNTSQDSPQN-DELAEKSENLAVSSEKTTSKKKKGKKNKGNKNQVSDDESQEL 80

Query: 271 VEPKISDDL--IKRIQAAE------KAKTRKEIKKEYDPDDPTGISPSSG 146
             P+   +L  +  +   E      K K  K+ KK  + D+P  I    G
Sbjct: 81  ESPQGPKELTAVTELDDDEFDYKPKKGKKGKKSKKVEEDDEPQEIESPQG 130


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = -1

Query: 325 KKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEKAKTRK-EIKKEYDPDDPTGISPSS 149
           +K R ++  ++P E   +    + DDL K+I+ A   + R  ++KK+    D  G S +S
Sbjct: 438 EKMRNALLQMLPEEMAFQEFQNVMDDLDKQIEQAYVKRNRSLKVKKKRIVTDKIGSSATS 497

Query: 148 G 146
           G
Sbjct: 498 G 498


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = -2

Query: 153 QAERKNLKLE*RKRSQRKPRNLIKL 79
           +AER  LK E RK +QRK R ++++
Sbjct: 363 EAERVKLKRERRKANQRKQREIVRM 387


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 358 SHKKTSKAMAGKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEKAK 212
           S  KTSK  + KKN KS  +   S +     P  ++   + + +++K+K
Sbjct: 193 SSTKTSKKKSSKKNSKSESNQDSSNDRSSTAPSTAESNNEHLSSSQKSK 241


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 138 FFSPLDGLMPVGSSGSYSFLISFLVL 215
           F +P D ++  GSS SY+ L+ +  L
Sbjct: 150 FLAPQDAILSSGSSSSYTALLDYTFL 175


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 295 IPSENGRRVEPKISDDLIKRIQAAEKAK 212
           I  E  +++  K+  DL KR++ AEK K
Sbjct: 599 INEEEEKKIYKKLKKDLSKRLERAEKLK 626


>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -1

Query: 376 DRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRRVE 266
           D+ NS+  K     + G+K   +  D +PSEN +  E
Sbjct: 440 DKGNSSPFKPLELNVVGEKKANAEVDSLPSENVQESE 476


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = -1

Query: 382 KSDRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEKAKTRK 203
           KS   N +SH+K+SK            D+IP +   +     S + I+ +   EKA  + 
Sbjct: 123 KSQSNNISSHEKSSKTTKNVSPGVMTSDLIPEKKSVK-HNNSSSNRIEGLADIEKAIRQI 181

Query: 202 EIKK 191
           EI +
Sbjct: 182 EISQ 185


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 192 FLISFLVLAFSAACILLIRSSDIFGST 272
           F   FL   FSAAC++LI ++ +   T
Sbjct: 157 FFYQFLFYGFSAACMVLISTAIMISRT 183


>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1004

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 360 RHTKRLLKRWLVRRIASQCLILSRPRMVEELS 265
           R  +R+L+RWL + +  +  I+ R   VEEL+
Sbjct: 437 RFGQRMLQRWLQKPLVDKENIIERLDAVEELA 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,180
Number of Sequences: 5004
Number of extensions: 41875
Number of successful extensions: 125
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)