Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2232
(640 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0098 - 25807993-25808193,25808629-25808710,25808891-258089... 33 0.14
04_04_1060 - 30473509-30473619,30473815-30473850,30474063-304740... 33 0.25
07_01_0488 - 3678329-3678577,3678769-3678810,3678891-3678944,367... 32 0.33
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 32 0.33
02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970... 31 0.58
03_03_0278 - 16126803-16129049 29 2.4
07_03_1325 + 25830838-25831440 29 3.1
07_03_1601 - 28047764-28047845,28048043-28048078,28048209-280483... 29 4.1
10_08_0736 + 20205934-20206551,20207258-20207426,20207562-202076... 28 5.4
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 5.4
12_01_0805 - 7378364-7378435,7378534-7378616,7378843-7379020,737... 28 7.2
07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383 28 7.2
07_01_0463 + 3502708-3503535 28 7.2
05_02_0093 + 6530930-6531048,6531077-6531377 28 7.2
05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213 27 9.5
01_05_0502 + 22771428-22771466,22772327-22772430,22773043-227731... 27 9.5
>02_05_0098 -
25807993-25808193,25808629-25808710,25808891-25808978,
25809062-25809133,25809388-25809556
Length = 203
Score = 33.5 bits (73), Expect = 0.14
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Frame = -1
Query: 439 AVAGRSRRVSDQN*TKLKIKSDRRNS--TSHKKTSKAMAGKKNRKSMFDIIPSENGR--- 275
A A +R +D++ K+++D+R S + ++ KA A + K + DII EN +
Sbjct: 69 ATATPTRTSNDRDIALAKVETDKRESLIKAWEENEKAKAENRASKKLLDIISWENTKKAV 128
Query: 274 -RVEPKISDDLIKRIQA--AEKAKTRKEI 197
+ + K ++ ++R +A AEKAK ++ I
Sbjct: 129 IKTQLKKKEEELERKKAEYAEKAKNKEAI 157
>04_04_1060 -
30473509-30473619,30473815-30473850,30474063-30474095,
30474246-30474335,30474466-30475215
Length = 339
Score = 32.7 bits (71), Expect = 0.25
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -1
Query: 289 SENGRRVEPKISDDLIKRIQAAEKAKTRKEIKKEYDPDDPTGISPSS 149
SEN R DLI R++ A ++ + +E P P G+S +S
Sbjct: 100 SENDNRPRETPGRDLIARLKERVNASRKRSLNRENSPSSPNGLSATS 146
>07_01_0488 -
3678329-3678577,3678769-3678810,3678891-3678944,
3679149-3679212,3679316-3679410,3679477-3679584,
3679679-3679752,3680338-3680410,3680539-3680586,
3680694-3680877,3681262-3681440,3682167-3682259,
3682738-3682851,3683570-3683644,3683852-3684112,
3684821-3684934,3685473-3685529,3686668-3686863,
3686922-3686986,3687112-3687195,3688155-3688223,
3688545-3688844
Length = 865
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = -1
Query: 328 GKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEKAKTRKEI 197
GKK D+ P E R VE D+L+K +Q EK RK +
Sbjct: 275 GKKKMFDAIDLPPPELYRHVEDISGDELVKALQIKEKILRRKAL 318
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 32.3 bits (70), Expect = 0.33
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = -1
Query: 388 KIKSDRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRRVEPKIS-DDLIKRIQAAEKAK 212
KI S+ N ++ S + A KK + ++ +I ++E + +DL +R++ EKAK
Sbjct: 407 KIPSNSDNLSTSTGQSGSNANKKEQSALRAVIKCVEDHKLEAEFPLEDLRERLEELEKAK 466
Query: 211 TRKE 200
T K+
Sbjct: 467 TEKK 470
>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
28797173-28797234,28797316-28797460,28797542-28797961,
28798041-28798090,28798163-28798349,28798426-28798680,
28798785-28798953,28799044-28799177,28799291-28799446,
28799534-28799719,28799798-28799962,28800074-28800190,
28800553-28800762,28800850-28801049,28801135-28801405,
28801481-28801547,28801644-28801942,28802425-28802991
Length = 1487
Score = 31.5 bits (68), Expect = 0.58
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = -2
Query: 573 SKNFTYLLGMSMGMLP*EKKDELLKQRDPEICLS*PPLKNKPAPMLWREDLDAF 412
S ++ YLL M++G L E+ +L+ ++ + LK LW DLDAF
Sbjct: 1094 SSDYEYLLSMAIGTLTLERVQQLIAEKG-RMENEVAELKRTRPKSLWMRDLDAF 1146
>03_03_0278 - 16126803-16129049
Length = 748
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = -1
Query: 388 KIKSDRRNSTSHKKTSKAMA---GKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEK 218
K KSD ++ +T ++ GKKN+K+MF E+G E SDD R QAA
Sbjct: 429 KAKSDLKDKLKEMQTKRSQVAANGKKNKKNMF----KESGGDDESLASDDSTAR-QAAHV 483
Query: 217 AKTRKEIKKEYDPDD 173
D DD
Sbjct: 484 DPEDNASVNSTDADD 498
>07_03_1325 + 25830838-25831440
Length = 200
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/69 (24%), Positives = 36/69 (52%)
Frame = -1
Query: 388 KIKSDRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEKAKT 209
K +D + K+ + + ++ ++FD+I + N ++ + D KR+ K KT
Sbjct: 110 KHAADDADEEDLKEWDEDFVDELDQDALFDVIAAANYLDIDGLL-DLTCKRVADTIKGKT 168
Query: 208 RKEIKKEYD 182
+EI+KE++
Sbjct: 169 PEEIRKEFN 177
>07_03_1601 -
28047764-28047845,28048043-28048078,28048209-28048339,
28048695-28048967,28049039-28049166,28049250-28049369,
28049461-28049538,28049598-28049669,28049790-28049849,
28050096-28050217,28052918-28053048,28053382-28053534,
28053628-28053755,28053831-28053968,28054056-28054144,
28055741-28055878,28056870-28057102
Length = 703
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +3
Query: 135 GFFSPLDGLMPVGSSGSYSFLISFLVLAFSAACILLIRSSDIFGSTLLPFSDGIISNIDL 314
G +S L ++ S S L SF +AC ++ +D+FG++ L + I S D
Sbjct: 175 GAWSELSKVVASNLSESVVSLASFDGDIMHSACTGVVIKTDLFGTSYLTSASLIRSFDDE 234
Query: 315 RFFLPAIALEVFL 353
+P +++EV L
Sbjct: 235 SKIMPFVSIEVHL 247
>10_08_0736 +
20205934-20206551,20207258-20207426,20207562-20207692,
20208100-20208144,20208145-20208939,20209081-20209128,
20209504-20209620,20210087-20210161
Length = 665
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -1
Query: 397 TKLKIKSDRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRR 272
++L ++ D+R + SH + +A +NR+ +++P GRR
Sbjct: 402 SQLTLECDKRRAISHSEEPQASGQSQNRE---NVVPRSEGRR 440
>06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.3 bits (60), Expect = 5.4
Identities = 25/102 (24%), Positives = 46/102 (45%)
Frame = -1
Query: 493 RPRNLPELTTIEK*TGTNAVAGRSRRVSDQN*TKLKIKSDRRNSTSHKKTSKAMAGKKNR 314
+P L EL +E+ + T +V+ +++ T+ I++ +++ K + R
Sbjct: 2788 KPVGLSELR-LEELSQTKSVSQSIVANAEETSTRSDIETPAMDASESKSPESDVHELSER 2846
Query: 313 KSMFDIIPSENGRRVEPKISDDLIKRIQAAEKAKTRKEIKKE 188
PS N + E S +L+K I AAE A T +K+
Sbjct: 2847 VEFMGPTPSANEKSNELH-SQELVKMISAAETASTEGHREKD 2887
>12_01_0805 -
7378364-7378435,7378534-7378616,7378843-7379020,
7379822-7379977,7380205-7380308,7381653-7381695,
7382142-7382234,7382391-7382686,7382795-7382942,
7383577-7383615
Length = 403
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -1
Query: 394 KLKIKSDRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRRVEPKISDD 248
K KIKS N+TSH K + KKN+ D+ + +E +S+D
Sbjct: 115 KEKIKS---NNTSHVDICKLLYAKKNKSQKDDVDATFKLNMIELSLSED 160
>07_01_0523 - 3879550-3880134,3880313-3880491,3881519-3882383
Length = 542
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -1
Query: 346 TSKAMAGKKNRKSMFDIIPSENGRRVEPKIS-DDLIKRIQAAEKAKTRKE 200
T ++ A KK + + +I R++E + +DL ++++ EKAKT K+
Sbjct: 354 TLQSNANKKEQSVLRAVIKCIEDRKLEAEFPLEDLQRQLEELEKAKTEKK 403
>07_01_0463 + 3502708-3503535
Length = 275
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/75 (28%), Positives = 31/75 (41%)
Frame = -1
Query: 394 KLKIKSDRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEKA 215
K K KSD++ KK GKK K D E + E K D + + +K
Sbjct: 112 KKKDKSDKKEEGKKKKDGDEEEGKKKEKKK-DKDGDEKEGKKEKKKDKDGDEEEEGKKKE 170
Query: 214 KTRKEIKKEYDPDDP 170
K +K+ + +DP
Sbjct: 171 KKKKDKGDKEKTNDP 185
>05_02_0093 + 6530930-6531048,6531077-6531377
Length = 139
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 559 GKILTSFKCLECLSGSTGFP 618
G ++TSF CL SGS FP
Sbjct: 33 GCLITSFPCLHASSGSAAFP 52
>05_03_0491 + 14682895-14683365,14684127-14684656,14684739-14685213
Length = 491
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -3
Query: 593 HSRHLKEVRILPICWECRWGCSPK 522
HSR L+ W CRWGC+ +
Sbjct: 447 HSRRLQSFNSR-CAWSCRWGCNKR 469
>01_05_0502 +
22771428-22771466,22772327-22772430,22773043-22773129,
22773212-22773287,22773393-22773467,22773639-22773692,
22773745-22773918,22774002-22774061,22774135-22774251,
22774448-22774542,22774811-22775013,22775177-22775274,
22775451-22775587,22776154-22776219,22776300-22776465,
22776537-22776659,22776763-22776845,22776943-22777084,
22777334-22777363,22777587-22777657,22777742-22778333
Length = 863
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +3
Query: 318 FFLPAIALEVFLCDVEFLLSLFIFN---FV*F*SETRLDLPATALVPVYFSMVV 470
F P IA E+F C+++ +L + + S + D P + L+ YFS VV
Sbjct: 76 FKFPFIACEIFTCEIDVILRTLVEDEQLMELLFSFVKSDHPHSTLLSGYFSKVV 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,405,392
Number of Sequences: 37544
Number of extensions: 284330
Number of successful extensions: 737
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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