Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2232
(640 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0) 53 2e-07
SB_27517| Best HMM Match : TolA (HMM E-Value=0.25) 35 0.049
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7) 29 4.2
SB_42156| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1) 28 5.6
SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9) 28 5.6
SB_48596| Best HMM Match : Filament (HMM E-Value=0.23) 28 7.4
SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2) 27 9.7
SB_45437| Best HMM Match : Ribosomal_L15e (HMM E-Value=0.53) 27 9.7
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 27 9.7
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_12381| Best HMM Match : CN_hydrolase (HMM E-Value=2.2e-36) 27 9.7
SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045) 27 9.7
>SB_18984| Best HMM Match : DNA_topoisoIV (HMM E-Value=0)
Length = 1182
Score = 52.8 bits (121), Expect = 2e-07
Identities = 29/56 (51%), Positives = 34/56 (60%)
Frame = -2
Query: 567 NFTYLLGMSMGMLP*EKKDELLKQRDPEICLS*PPLKNKPAPMLWREDLDAFLIKI 400
+F YLL MSM L EKKDELLKQRD + L+ K LW EDLD FL ++
Sbjct: 742 DFNYLLNMSMWSLSQEKKDELLKQRDQK-AAELEDLRKKSPKDLWNEDLDIFLAEL 796
>SB_27517| Best HMM Match : TolA (HMM E-Value=0.25)
Length = 492
Score = 35.1 bits (77), Expect = 0.049
Identities = 26/93 (27%), Positives = 42/93 (45%)
Frame = -1
Query: 466 TIEK*TGTNAVAGRSRRVSDQN*TKLKIKSDRRNSTSHKKTSKAMAGKKNRKSMFDIIPS 287
TI + T +N + + R+ KLK + ++ K+T K + K + P
Sbjct: 46 TISESTNSNTLHTKKRKKKKTELQKLKHEK-KKILKELKQTKKCIKEDSANKESENYSPF 104
Query: 286 ENGRRVEPKISDDLIKRIQAAEKAKTRKEIKKE 188
EN RR+ S+ K Q ++ +KEIKKE
Sbjct: 105 ENRRRLARTTSEMQTKLEQIKDQISVKKEIKKE 137
>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1845
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 349 KTSKAMAGKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEKAKTRK 203
K S ++K + ++P +G+ + L++ QAAEK T K
Sbjct: 351 KDSAVRRTTTDKKKSYSVLPEMSGQPAHTRTGSSLVEEQQAAEKVTTNK 399
>SB_52562| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1490
Score = 29.1 bits (62), Expect = 3.2
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = -1
Query: 274 RVEPKISDDLIKRIQAAEKAKTRKEIKKEYDPDDPTGISPSSG 146
+ EP+++ I ++ +AK + ++KK + P G +SG
Sbjct: 535 QAEPRVTTSEIAQVSVGRRAKAKADVKKTLENTRPNGNPVTSG 577
>SB_3531| Best HMM Match : Cytomega_US3 (HMM E-Value=6.7)
Length = 519
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = -3
Query: 440 CCGGKI*TRF*SKLDEVEDKER---QEELNVTQ-KDF 342
CC GK + F KLDE +D E+ ++E N+T +DF
Sbjct: 83 CCQGKKKSTFYRKLDEYDDLEKMKGEKEKNITDVRDF 119
>SB_42156| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 315 RFFLPAIALEVFLCDVEFLLSLFIF 389
RFF P + + V + ++ LLSLF+F
Sbjct: 36 RFFSPVLVVTVLIMAIQKLLSLFVF 60
>SB_40929| Best HMM Match : Attractin (HMM E-Value=5.1)
Length = 566
Score = 28.3 bits (60), Expect = 5.6
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 1/110 (0%)
Frame = -1
Query: 502 QAERPRNLPELTTIEK*TGTNAVAGRSRRVSDQN*TKLKIKSDRRNST-SHKKTSKAMAG 326
QA R R T K A + R + S + T D++ + + +KTSK
Sbjct: 435 QAARQRQASRKTKTSKTQDRQATSRRPGQASRKTKTSKPQDQDKQAARQARRKTSKQQDA 494
Query: 325 KKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEKAKTRKEIKKEYDPD 176
+K ++ PS+ R + K S+ K QAA +A + + K D D
Sbjct: 495 EKQEQAKQAARPSQ--ARCKTKTSNPQDK--QAARQASCKTKTSKPQDQD 540
>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 777
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -1
Query: 376 DRRNSTSHKKT-SKAMAGKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEKAKTRKE 200
D N T +KT + +A K N + +R +P ++DD I + + K+ K
Sbjct: 535 DMNNETEVEKTIQEILATKLNSVKQLKSSLTPVTQRFQPNLNDDYINSFRNGMRCKSYKS 594
Query: 199 IKKEYDP 179
++ Y P
Sbjct: 595 LETLYAP 601
>SB_1021| Best HMM Match : Sec2p (HMM E-Value=1.9)
Length = 451
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = -1
Query: 436 VAGRSRRVSDQN*TKLKIKSDRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRRVEP 263
VA ++ QN + + D SH K + ++G K++ F ++ +NG +VEP
Sbjct: 89 VASSDLKLGYQNIAQCEYYGDGDVYQSHVK-KRPISGGKSKDEFFKLLAQKNGIKVEP 145
>SB_48596| Best HMM Match : Filament (HMM E-Value=0.23)
Length = 458
Score = 27.9 bits (59), Expect = 7.4
Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Frame = -1
Query: 445 TNAVAGRSRRVSDQN*TKLKIKSDRRNSTSHKK--TSKAMAGKKNRKSMFDIIPSENGRR 272
TN R ++ + + +I+ + + + K + + + GKK+ + D + E GRR
Sbjct: 238 TNEYEDMRARFNEVDTERQEIRRELKEALRQIKMLSGECLQGKKDATDLKDRLEQEEGRR 297
Query: 271 VEPKISDDLIKR---IQAAEKAKTRKEIKK 191
++ + + IK+ + +EK + R+E K
Sbjct: 298 LDSRQEMNAIKQNIIMLESEKEEARQEAAK 327
>SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)
Length = 508
Score = 27.5 bits (58), Expect = 9.7
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 364 STSHKKTSKAMAGKKN--RKSMFD-IIPSENGRRVEPKISDDLIKRIQAAEKAKTRKEIK 194
S + SK + G N S+F + N + K DLIK +++E+ E
Sbjct: 211 SRKRQTPSKRLFGHSNDNNASLFTKTTKTINALKESSKALGDLIKNRRSSEEIDDTDERN 270
Query: 193 KEYDPDDPTGISPSSG 146
E + DP +SPSSG
Sbjct: 271 DELEEKDP--LSPSSG 284
>SB_45437| Best HMM Match : Ribosomal_L15e (HMM E-Value=0.53)
Length = 273
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 343 SKAMAGKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQ--AAEKAKTRKEIKKEYDPDDP 170
SK + KK+ D E+ RR ++++RIQ A E+A R +K+ D DDP
Sbjct: 38 SKVVHPKKHHSEENDETDKEHVRRKRHPDLAEMLRRIQRNAGEEALVR--VKRSPDADDP 95
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 27.5 bits (58), Expect = 9.7
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = -2
Query: 357 HTKRLLKRWLVRRIASQCLILSRPRMVEELSRRYLMI*SRGYRPQRKLKPGKRLRRNMIQ 178
H L +R ++IA + L + + EL R+ R +RK K + R+ +Q
Sbjct: 579 HLADLNERQKQQKIAEEQERLRKIQEQMELERK------RREEEERKRKQEEEERKRKMQ 632
Query: 177 MTLQA*AHQAERKNLKLE*RKRSQRKPRN 91
M LQ + E+K E RKR +++ ++
Sbjct: 633 MELQRRKEEEEQKKRDEEERKRREKEEKD 661
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/65 (26%), Positives = 32/65 (49%)
Frame = -1
Query: 397 TKLKIKSDRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEK 218
T+LKI ++RR + K+ S+ G+ ++ + R E K + K+ + +K
Sbjct: 21 TRLKIVNERRTRAAEKEMSQMKEGE-------ELAEKKKASRTEKKATKKQEKKAEKKDK 73
Query: 217 AKTRK 203
A+T K
Sbjct: 74 AQTMK 78
>SB_12381| Best HMM Match : CN_hydrolase (HMM E-Value=2.2e-36)
Length = 360
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 252 SDIFGSTLLPFSDGIISNID 311
SDI G + +PF DG++S D
Sbjct: 148 SDITGQSTVPFGDGVVSTSD 167
>SB_10354| Best HMM Match : AT_hook (HMM E-Value=0.045)
Length = 191
Score = 27.5 bits (58), Expect = 9.7
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -1
Query: 379 SDRRNSTSHKKTSKAMAGKKNRKSMFDIIPSENGRRVEPKISDDLIKRIQAAEKAKTRKE 200
+D+R KK A KK +K +PS RRV + + + I+ + K+
Sbjct: 102 ADKRARGRPKKADGEPATKKPKKVKESHVPSRASRRVANMKTGETLPEIEDKDPMPKPKK 161
Query: 199 --IKKEYDPDDP 170
KK+ +P +P
Sbjct: 162 TTTKKKAEPSEP 173
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,171,275
Number of Sequences: 59808
Number of extensions: 298380
Number of successful extensions: 1126
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1046
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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