Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2232
         (640 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.47 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    25   0.82 
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    23   1.9  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    23   1.9  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    23   1.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.5  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +3

Query: 237 LLIRSSDIFGSTLLPFSDGIISNID-LRFFLPAIALEVFLCDVEFLLSLFIF 389
           ++IR   +F +  L     +IS +  L F+LPA A E     +  LLSL +F
Sbjct: 227 IIIRRKTLFYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVF 278


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -1

Query: 283 NGRRVEPKISDDLIKRIQAAEKAKTRKEIKKE 188
           +GR VE  + DDLIK I  +++  T +EI ++
Sbjct: 63  SGRPVE--VDDDLIKAIIDSDRHSTTREIAEK 92


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
           protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 638 PETWSLKGNPVDPDKHSR 585
           PE W    N  DPDK  R
Sbjct: 99  PELWDSLANKYDPDKKYR 116


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
           protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 638 PETWSLKGNPVDPDKHSR 585
           PE W    N  DPDK  R
Sbjct: 99  PELWDSLANKYDPDKKFR 116


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
           protein 3c precursor protein.
          Length = 130

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -3

Query: 638 PETWSLKGNPVDPDKHSR 585
           PE W    N  DPDK  R
Sbjct: 99  PELWDSLANKYDPDKKYR 116


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 529 EHPHRHSQQIG 561
           EHPH+H Q  G
Sbjct: 19  EHPHQHQQHYG 29


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 587 WNAYQGQRGFP 619
           WN+Y G  GFP
Sbjct: 336 WNSYWGILGFP 346


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 587 WNAYQGQRGFP 619
           WN+Y G  GFP
Sbjct: 336 WNSYWGILGFP 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,467
Number of Sequences: 438
Number of extensions: 2971
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)