Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--2231
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical p...    30   1.2  
Z80216-1|CAB02287.2|  338|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AC006625-7|AAK68274.1|  346|Caenorhabditis elegans Hypothetical ...    28   6.2  

>Z70208-11|CAA94144.1|  598|Caenorhabditis elegans Hypothetical
           protein F54B11.11 protein.
          Length = 598

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 478 INM*YPQCFQGFYNVLGSYFTTKVSFRI-GFNTLHYSKNGSKG 603
           +N+ YP         +G+Y TT  +F + G+ TL+Y    + G
Sbjct: 427 VNLTYPPALNSSVTSIGNYLTTSANFTMRGYITLYYEITAASG 469


>Z80216-1|CAB02287.2|  338|Caenorhabditis elegans Hypothetical
           protein F10G8.1 protein.
          Length = 338

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 365 IFVHCGFGITRTQHLLQLEYI 303
           I VHC  GI RT  ++ LEYI
Sbjct: 246 IVVHCSAGIGRTGSVVMLEYI 266


>AC006625-7|AAK68274.1|  346|Caenorhabditis elegans Hypothetical
           protein C55B7.3 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 365 IFVHCGFGITRTQHLLQLEYI 303
           I VHC  GI RT  ++ LEYI
Sbjct: 254 IVVHCSAGIGRTGSVVMLEYI 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,136,631
Number of Sequences: 27780
Number of extensions: 220521
Number of successful extensions: 457
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)