Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--2230
(558 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 31 0.74
Z81476-3|CAB03922.3| 592|Caenorhabditis elegans Hypothetical pr... 31 0.74
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ... 30 1.3
Z93381-2|CAB07605.1| 374|Caenorhabditis elegans Hypothetical pr... 29 1.7
U23182-2|ABD94105.1| 441|Caenorhabditis elegans Hypothetical pr... 29 3.0
U23182-1|ABD94104.1| 468|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z72503-8|CAJ85752.1| 341|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z72503-7|CAA96597.1| 424|Caenorhabditis elegans Hypothetical pr... 28 4.0
Z81560-3|CAB04548.2| 328|Caenorhabditis elegans Hypothetical pr... 27 6.9
U55854-4|AAK68160.1| 280|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z47745-1|CAA87663.1| 358|Caenorhabditis elegans Hypothetical pr... 27 9.1
>Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical
protein M04C3.2 protein.
Length = 606
Score = 30.7 bits (66), Expect = 0.74
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 136 LLRDDDMTLHFIYM*EDRETDDFNDFIL 53
LL DD+ +H+ Y ED++ DD ++ ++
Sbjct: 303 LLEKDDLVIHYFYRNEDKKPDDSHEVVI 330
>Z81476-3|CAB03922.3| 592|Caenorhabditis elegans Hypothetical
protein C25F9.4 protein.
Length = 592
Score = 30.7 bits (66), Expect = 0.74
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -3
Query: 136 LLRDDDMTLHFIYM*EDRETDDFNDFIL 53
LL DD+ +H+ Y ED++ DD ++ ++
Sbjct: 302 LLEKDDLVIHYFYRNEDKKPDDSHEVVI 329
>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
protein Y42A5A.1 protein.
Length = 1045
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = -1
Query: 480 TTNKKPIFIYILNISP-FRIKSVQFPKIFEIELIIFV 373
TT + P++++I N + +I + P ++E+EL +FV
Sbjct: 134 TTTEDPLYVHINNTNHRLQIPQIHIPLLYEVELKLFV 170
>Z93381-2|CAB07605.1| 374|Caenorhabditis elegans Hypothetical
protein F28G4.2 protein.
Length = 374
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/15 (73%), Positives = 13/15 (86%)
Frame = +3
Query: 210 INHICNIYFLPVTLS 254
+NHICNI F+P TLS
Sbjct: 89 LNHICNIQFIPNTLS 103
>U23182-2|ABD94105.1| 441|Caenorhabditis elegans Hypothetical
protein F40B5.2b protein.
Length = 441
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 199 HILILIISATFIFYQLHYLSFKVR*NFVNSSQNIGKQNKLNYALLTVFMRKILVIPNVY 375
HILI ++ A +FY + KV N V++ K+N+ + LL + + I + +Y
Sbjct: 128 HILIFLLIADVLFYSTKLIHSKVAPNSVHTYL---KENRCYHILLALILGFIFMFAGLY 183
>U23182-1|ABD94104.1| 468|Caenorhabditis elegans Hypothetical
protein F40B5.2a protein.
Length = 468
Score = 28.7 bits (61), Expect = 3.0
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +1
Query: 199 HILILIISATFIFYQLHYLSFKVR*NFVNSSQNIGKQNKLNYALLTVFMRKILVIPNVY 375
HILI ++ A +FY + KV N V++ K+N+ + LL + + I + +Y
Sbjct: 155 HILIFLLIADVLFYSTKLIHSKVAPNSVHTYL---KENRCYHILLALILGFIFMFAGLY 210
>Z72503-8|CAJ85752.1| 341|Caenorhabditis elegans Hypothetical
protein C26C6.4b protein.
Length = 341
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +3
Query: 165 LQESVLKVYNMSYFNI----NHICNIYFLPVTLS 254
++E+++ ++ N+ NHICN+ F+P LS
Sbjct: 30 IEEAIINIFQYDSSNLDIFLNHICNLEFIPGALS 63
>Z72503-7|CAA96597.1| 424|Caenorhabditis elegans Hypothetical
protein C26C6.4a protein.
Length = 424
Score = 28.3 bits (60), Expect = 4.0
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Frame = +3
Query: 165 LQESVLKVYNMSYFNI----NHICNIYFLPVTLS 254
++E+++ ++ N+ NHICN+ F+P LS
Sbjct: 113 IEEAIINIFQYDSSNLDIFLNHICNLEFIPGALS 146
>Z81560-3|CAB04548.2| 328|Caenorhabditis elegans Hypothetical
protein K02E2.3 protein.
Length = 328
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/69 (21%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +1
Query: 202 ILILIISATFIF-YQLHYLSFKVR*NFVNSSQNIGKQNKLNYALLTVFMRKILVIPNVYK 378
IL+LI++ F F +++ + F + + ++ ++ KQ + +L IP+ Y
Sbjct: 201 ILVLILTQAFFFVFRIFWYLFHIT-SVSKNTAHLQKQFFFAICFHVIIPLIVLSIPSFYI 259
Query: 379 YY*LNFEYF 405
++ + F+Y+
Sbjct: 260 FFAMRFDYY 268
>U55854-4|AAK68160.1| 280|Caenorhabditis elegans Hypothetical
protein C04G6.2 protein.
Length = 280
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 318 KLRSFDSIYEKNTGDTKCLQILLTQFRIFLE 410
K++S+ + KN G C Q+ + QFRI++E
Sbjct: 16 KMKSW-LVETKNVGKETCKQLFVYQFRIYIE 45
>Z47745-1|CAA87663.1| 358|Caenorhabditis elegans Hypothetical
protein T19H5.2 protein.
Length = 358
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 355 LVIPNVYKYY*LNFEYFWKLYAFNAKRRYIKNVNEYRFFISGGFTIWS 498
LVIP + + ++ +Y W +R EY GG +IWS
Sbjct: 285 LVIPTIEQTEQIDMQYVWNPEKKEIQRFNSSTKTEYTKLQMGGVSIWS 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,424,253
Number of Sequences: 27780
Number of extensions: 222011
Number of successful extensions: 492
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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